Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1860 ATGAGAAACTACAGGATGGCCAAACCGCATTGTTACCCATCATTATCAATTTCAACTCACCACAACACTTCAATTCTTCTTGATTCCCTCTATTGCTTTGAAGATGAGATTGAAGATGGCCATTCCCAATCCCAACCAAAGTTCCAACCTTTCTCAATTAATCTTAACATCAATTCCCCAAACTCTGTTTTCTTGTCGGATTGGGAAGATGATGAATTGGTGTCTCTGTTTTCAAAAGAGAACAGAAATAAGCTTCACAACACTCTCCCACATAACCCTTCTCTAGCTGCAGCTCGTTCCAAGGCTGTTGACTGGATTCTTAAGGTCAATTCTCATTACTCTTTCACTGCACACACCGCCGTTTTGGCCGTTGATTATGTCGATAGGTTTCTCTCCACCCCACATTTTCATATTGAGAAGCCATGGATGACCCATCTCACTGCCATTGCTTCTTTATCTCTCGCTGCTAAAGTAGAAGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAAACCATTACAAGAATGGAAATTCTTGTTCTCTCTACACTTCTTTGGAGAATGAATCCAGTGAACCCAGTTTCCTTTTTAGATTATATTGTAAGACGTCTCGGCTTCAAGGACCAACTCTGTTCTGAACTCCTCTGTAAATGTGAACGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTCCCATCAGTAATAGCAACCGCCATTATTTTTCAAGTCATCAACGACATAGAACCCCATCTTACCGCAAAATACCACGATCAGCTTATGGGTTTTCTTCAAATCGACAAGGATAAGATGGAGGAATGCTCGCAATTCATCTTAGAGGCTTCATCGAAAGGACAGAGAAACGAATGGAAGAATAAACGAAGATTTGGGTTAGTCGACATGTCGTGCAGCTCAAATGGTGGGAATAGGAATGTCGACATTGTCATGTCGTCGCCGGAGACAACAACTAAGAAGAGAAAAATTAACGAACAACCTCCGTAG 1041 41.21 MRNYRMAKPHCYPSLSISTHHNTSILLDSLYCFEDEIEDGHSQSQPKFQPFSINLNINSPNSVFLSDWEDDELVSLFSKENRNKLHNTLPHNPSLAAARSKAVDWILKVNSHYSFTAHTAVLAVDYVDRFLSTPHFHIEKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPVSFLDYIVRRLGFKDQLCSELLCKCERLLLSVIIDCRFVCFLPSVIATAIIFQVINDIEPHLTAKYHDQLMGFLQIDKDKMEECSQFILEASSKGQRNEWKNKRRFGLVDMSCSSNGGNRNVDIVMSSPETTTKKRKINEQPP 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22706505 22707946 + PI0013700.1 Cmetu07g1860 362341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1860 346 SUPERFAMILY Cyclin-like 202 295 IPR036915 -
Cmetu07g1860 346 PANTHER CYCLINS 69 293 IPR039361 -
Cmetu07g1860 346 Pfam Cyclin, C-terminal domain 201 299 IPR004367 -
Cmetu07g1860 346 Pfam Cyclin, N-terminal domain 88 199 IPR006671 -
Cmetu07g1860 346 SMART Cyclin_C_2 201 318 IPR004367 -
Cmetu07g1860 346 SUPERFAMILY Cyclin-like 61 199 IPR036915 -
Cmetu07g1860 346 CDD CYCLIN_AtCycD-like_rpt1 98 196 - -
Cmetu07g1860 346 Gene3D - 200 289 - -
Cmetu07g1860 346 SMART cyclin_7 104 192 IPR013763 -
Cmetu07g1860 346 MobiDBLite consensus disorder prediction 326 346 - -
Cmetu07g1860 346 CDD CYCLIN_AtCycD-like_rpt2 201 287 - -
Cmetu07g1860 346 ProSitePatterns Cyclins signature. 99 130 IPR006671 -
Cmetu07g1860 346 Gene3D - 96 199 - -
Cmetu07g1860 346 FunFam D6-type cyclin 82 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1860 K14505 - - csv:101218302 659.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1860 Cmetu-Chr7:22706505 Cmetu08g1365 Cmetu-Chr8:20946521 5.60E-37 dispersed
Cmetu01g0988 Cmetu-Chr1:658131 Cmetu07g1860 Cmetu-Chr7:22706505 5.80E-56 wgd
Cmetu03g1234 Cmetu-Chr3:1164770 Cmetu07g1860 Cmetu-Chr7:22706505 1.30E-84 wgd
Cmetu07g1860 Cmetu-Chr7:22706505 Cmetu08g1936 Cmetu-Chr8:19848849 8.60E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g719 Blo01g01517 Blo12g00970 . . . . Bma04g00152 . Cmo05g00163 Cmo12g00510 Cma01g01813 Cma09g00261 Car01g01415 Car12g00528 Sed10g2003 Cpe06g00180 Cpe07g00498 Bhi04g00381 Tan02g0947 Cmetu01g0988 . Hepe08g1303 . Lcy13g2102 Cla08g01590 Cam08g2089 Cec08g1670 Cco08g1802 Clacu08g1775 . Cre08g1559 . Cone7ag1351 Cone17ag0862 Cone20ag0209 Lsi04g01520 Csa04g02445 . Cme03g02070 Blo17g00869 Blo18g00706 . . Bpe02g01789 Bpe05g00034 Bma01g00666 . Sed11g0930 Cmo01g01869 Cmo09g00254 Cma12g00567 Cma05g00163 Car05g00140 Car09g00219 Cpe11g00137 Cpe02g00199 Bhi09g03276 Tan01g4734 Cmetu07g1860 . Hepe01g1799 Mch11g0329 . Cla05g02076 Cam05g2226 Cec05g2245 Cco05g2287 Clacu05g2220 Cmu05g2087 Cre05g2211 Lsi08g01495 Csa02g01926 Chy07g00160 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0864 . 1 294 Core Cell Cycle Gene Families AT3G48750 86.1 2.2e-151 531.9
Cmetu08g0441 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 7.7e-96 347.4
Cmetu07g2307 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.7 1.5e-94 343.2
Cmetu08g0441 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.5 1.5e-153 539.3
Cmetu07g2307 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.3 9.9e-118 420.2
Cmetu10g0864 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 2.4e-92 335.9
Cmetu08g0441 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 3.7e-123 438.0
Cmetu07g2307 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.2 1.5e-92 336.3
Cmetu07g2307 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 4.1e-156 547.7
Cmetu08g0441 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 5.9e-118 421.0
Cmetu10g0864 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 1.3e-93 340.1
Cmetu07g2307 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 1.4e-159 559.3
Cmetu08g0441 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 2.2e-120 429.1
Cmetu10g0864 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.7e-97 351.3
Cmetu04g0665 . 1 516 Core Cell Cycle Gene Families AT5G10270 71.7 1.2e-208 723.0
Cmetu05g1656 . 159 670 Core Cell Cycle Gene Families AT5G10270 67.3 3.8e-191 664.8
Cmetu06g0566 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 1.9e-97 353.6
Cmetu06g2566 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.6 1.6e-96 350.5
Cmetu09g1868 . 137 453 Core Cell Cycle Gene Families AT5G10270 52.7 2.7e-96 349.7
Cmetu11g2191 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.3 6.6e-95 345.1
Cmetu10g1362 . 147 463 Core Cell Cycle Gene Families AT5G10270 51.8 1.5e-94 344.0
Cmetu12g1045 . 137 440 Core Cell Cycle Gene Families AT5G10270 53.8 2.1e-93 340.1
Cmetu05g1477 . 101 419 Core Cell Cycle Gene Families AT5G10270 50.7 6.2e-93 338.6
Cmetu12g0439 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.7 5.2e-92 335.5
Cmetu11g0085 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 7.5e-91 331.6
Cmetu02g1545 . 99 378 Core Cell Cycle Gene Families AT5G10270 51.1 9.5e-86 314.7
Cmetu04g0665 . 65 515 Core Cell Cycle Gene Families AT5G64960 71.1 3.0e-171 598.6
Cmetu05g1656 . 242 669 Core Cell Cycle Gene Families AT5G64960 68.5 1.1e-168 590.1
Cmetu06g0566 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 1.7e-81 300.4
Cmetu11g2191 . 196 458 Core Cell Cycle Gene Families AT5G64960 53.2 3.8e-81 299.3
Cmetu12g1045 . 178 440 Core Cell Cycle Gene Families AT5G64960 52.9 4.9e-81 298.9
Cmetu11g0085 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.6 5.4e-80 295.4
Cmetu06g2566 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.4 1.6e-79 293.9
Cmetu09g1868 . 191 453 Core Cell Cycle Gene Families AT5G64960 52.9 1.6e-79 293.9
Cmetu10g1362 . 201 463 Core Cell Cycle Gene Families AT5G64960 52.5 3.5e-79 292.7
Cmetu02g1545 . 153 378 Core Cell Cycle Gene Families AT5G64960 50.8 1.1e-69 261.2
Cmetu02g1578 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.0 6.2e-173 604.0
Cmetu02g1578 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.4 3.9e-155 544.7
Cmetu02g1578 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.0 9.4e-174 606.7
Cmetu08g0683 . 30 482 Core Cell Cycle Gene Families AT5G63610 78.3 1.3e-201 699.5
Cmetu05g0645 . 1 481 Core Cell Cycle Gene Families AT4G28980 63.2 3.6e-175 611.7
Cmetu03g0063 . 5 537 Core Cell Cycle Gene Families AT1G44110 55.5 4.5e-143 505.0
Cmetu04g0507 . 203 469 Core Cell Cycle Gene Families AT1G44110 56.2 4.3e-85 312.4
Cmetu03g2153 . 266 543 Core Cell Cycle Gene Families AT1G44110 52.1 1.4e-75 280.8
Cmetu01g1734 . 170 329 Core Cell Cycle Gene Families AT1G44110 50.5 4.8e-44 176.0
Cmetu04g0507 . 203 469 Core Cell Cycle Gene Families AT1G77390 52.4 2.3e-75 280.0
Cmetu03g2153 . 266 523 Core Cell Cycle Gene Families AT1G77390 51.2 4.2e-69 259.2
Cmetu04g0507 . 10 481 Core Cell Cycle Gene Families AT5G25380 53.5 1.1e-117 420.6
Cmetu03g2153 . 145 539 Core Cell Cycle Gene Families AT5G25380 53.7 9.2e-101 364.4
Cmetu01g1482 . 120 343 Core Cell Cycle Gene Families AT5G25380 51.6 3.0e-59 226.5
Cmetu04g0507 . 3 419 Core Cell Cycle Gene Families AT5G11300 51.4 3.9e-93 339.0
Cmetu03g2153 . 259 477 Core Cell Cycle Gene Families AT5G11300 69.9 7.1e-79 291.6
Cmetu03g0176 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.3e-60 229.6
Cmetu03g2153 . 232 539 Core Cell Cycle Gene Families AT1G15570 53.0 2.2e-86 316.6
Cmetu01g1734 . 154 329 Core Cell Cycle Gene Families AT1G80370 54.0 8.5e-49 191.8
Cmetu03g0176 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.8 4.0e-115 411.8
Cmetu07g2012 . 1 381 Core Cell Cycle Gene Families AT5G43080 53.1 8.3e-105 377.5
Cmetu04g0507 . 205 471 Core Cell Cycle Gene Families AT5G43080 54.7 6.0e-79 291.6
Cmetu03g0176 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.6 2.9e-124 442.2
Cmetu07g2012 . 1 381 Core Cell Cycle Gene Families AT1G47210 51.2 4.0e-105 378.6
Cmetu04g0507 . 191 471 Core Cell Cycle Gene Families AT1G47210 51.6 1.3e-76 283.9
Cmetu01g1482 . 84 351 Core Cell Cycle Gene Families AT1G47210 50.6 2.5e-75 279.6
Cmetu03g2153 . 263 529 Core Cell Cycle Gene Families AT1G47210 50.6 1.9e-70 263.5
Cmetu03g0176 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 4.0e-93 338.6
Cmetu07g2012 . 94 379 Core Cell Cycle Gene Families AT1G47220 55.2 7.3e-87 317.8
Cmetu03g0176 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.6 6.5e-116 414.5
Cmetu07g2012 . 1 381 Core Cell Cycle Gene Families AT1G47230 54.1 5.0e-108 388.3
Cmetu01g1482 . 66 351 Core Cell Cycle Gene Families AT1G47230 52.1 1.7e-76 283.5
Cmetu08g1930 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 3.7e-115 412.1
Cmetu08g1930 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 5.0e-83 305.1
Cmetu05g0055 . 104 306 Core Cell Cycle Gene Families AT5G06150 62.7 4.4e-63 238.8
Cmetu08g1930 . 1 406 Core Cell Cycle Gene Families AT3G11520 57.6 8.0e-109 391.0
Cmetu04g1031 . 171 397 Core Cell Cycle Gene Families AT3G11520 51.5 1.8e-60 230.3
Cmetu05g0055 . 14 413 Core Cell Cycle Gene Families AT2G26760 51.0 1.2e-104 377.1
Cmetu04g1031 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 6.5e-128 454.5
Cmetu07g0958 . 37 438 Core Cell Cycle Gene Families AT2G17620 52.4 5.4e-106 381.7
Cmetu04g1031 . 5 397 Core Cell Cycle Gene Families AT4G35620 58.9 1.3e-106 383.6
Cmetu07g0958 . 37 393 Core Cell Cycle Gene Families AT4G35620 52.5 5.9e-88 321.6
Cmetu05g0055 . 139 365 Core Cell Cycle Gene Families AT4G35620 50.9 2.5e-54 209.9
Cmetu07g0958 . 1 436 Core Cell Cycle Gene Families AT1G20610 64.7 3.5e-145 511.9
Cmetu04g1031 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.2 3.7e-123 438.7
Cmetu07g0958 . 1 333 Core Cell Cycle Gene Families AT1G76310 63.3 1.2e-103 373.6
Cmetu04g1031 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.2 4.3e-82 302.0
Cmetu08g1930 . 177 343 Core Cell Cycle Gene Families AT1G76310 52.1 2.8e-41 166.4
Cmetu05g0055 . 135 302 Core Cell Cycle Gene Families AT1G76310 52.9 2.8e-41 166.4
Cmetu01g1284 . 186 641 Core Cell Cycle Gene Families AT1G16330 53.0 2.1e-117 420.2
Cmetu10g0407 . 1 328 Core Cell Cycle Gene Families AT1G70210 62.5 9.8e-103 370.5
Cmetu09g1377 . 1 314 Core Cell Cycle Gene Families AT1G70210 60.5 3.3e-98 355.5
Cmetu06g1092 . 5 335 Core Cell Cycle Gene Families AT4G34160 50.3 2.6e-80 296.2
Cmetu03g1234 . 50 326 Core Cell Cycle Gene Families AT4G34160 50.2 4.8e-66 248.8
Cmetu07g1860 . 68 293 Core Cell Cycle Gene Families AT4G34160 50.9 5.7e-59 225.3
Cmetu08g1365 . 48 271 Core Cell Cycle Gene Families AT5G65420 58.1 5.7e-69 258.1
Cmetu03g1362 . 63 262 Core Cell Cycle Gene Families AT5G65420 56.9 6.7e-62 234.6
Cmetu08g1365 . 53 229 Core Cell Cycle Gene Families AT5G10440 59.3 2.9e-55 212.2
Cmetu03g1362 . 58 236 Core Cell Cycle Gene Families AT5G10440 53.9 5.8e-51 198.0
Cmetu08g1828 . 1 277 Core Cell Cycle Gene Families AT5G27620 66.8 5.6e-102 367.9
Cmetu12g1345 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 6.6e-43 169.9
Cmetu11g2372 . 1 82 Core Cell Cycle Gene Families AT2G27960 95.1 1.5e-42 168.7
Cmetu11g2372 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.2e-39 157.1
Cmetu12g1345 . 1 83 Core Cell Cycle Gene Families AT2G27970 84.3 1.2e-38 155.6
Cmetu10g1141 . 31 1024 Core Cell Cycle Gene Families AT3G12280 73.3 0.0e+00 1404.0
Cmetu01g0245 . 2 485 Core Cell Cycle Gene Families AT1G02970 59.3 6.0e-157 551.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012604 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29