Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1894 ATGGATGTGAACGGCAATAAACCTTTGAAAGTCGTTCGAAGAAGTTCGTCTCAGAAGGAAGGTGAAAATGAAGTTGTGGTTGAAATTAGCACTAGCAGCGTTGTGTCTTCGAAAGAAACCAGAGATAGAGATGATTACTCTGTACTGAACCAAAACAGAGTCGATTCACAGAACAAACAGTCGACCGGTTCAAGCATTGGCCATGGCTACGATTCACATCTTCCTCCCACTGCTAATAAGCCCTTGAAAATTCCCAGTTCAAATGGAACCCTCACGCCCAGAAGATCTCTCAAAAGATCACTTCTATCGAGACCCAAATCCAGATTTGGGGAACAGCCACGTTACATCGATTCAGAAGATATGTTTGAGGAGAATCATGAGTCGTCGAGAGAACAAATCGGTGCAACTTCATCCAGAAGCTCTGCTCTTAACACGCCAAAGGCCCAACCTGAGGAAGAAGATGAAGAGGATATCGTTAAGACAGAGCAGTTGAACAAAAAGCACAAGAAATGGAAGGTGAAGACGATGATTAACTTGACCGTTAACCGTTTGAAAAATTGCTTCTTTTGGGGTTTGAAGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGATTGATATTTACTCATTGGGCTATGAATGTGGTTAGAAAAGTGCTTTATTTTGTTTATGGGTTGAAGAAGAGTGTCCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGTATCGTTGTTCAATCGGAGTAACCATAGGAGTTCAAGAACCATTGGGAAGATTTTGGATGCTATTACATGGACTCTTGTTGCTCTTCTTATAGGGGCAGTCCTATGGTTGGTAAAAACATTGTTGTTGAAAATACTGGCATCCAAGTTCCATAAGGATCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACCCTCTTGGGGTCTCCATTAATGCAGGGAGCTGAAAGTGCTGCCAAGTTCAGCTGTTGTCGATTTAGTTTGAAGAGTAAAAAATCAGACCATAAGAAGGTAATTGACATGGGAAAGATTCACCAGCTGCAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTTGAGGCAGTTACAAGTTCGGCGATGTCAATCTCACAAATACTTGATGAAAGCTACTATAATGTTGGCGATGGCGAGATTGCCGATGAAATGGAAATTGCCAGCATCGTTGCCTCCAAGATCCTTAGAAATGTTGCTCTTCCTGGAAAAAAGTTCATACAGGAAGAGGATCTTCTGAAATTCATGGTCAAAGAAGAAATTGATCTTGTGTTACCAAACTTTGAGGTAGATGAGACAAGGAAGATTAACAAGAAAGCTCTCAGAAATTGGGTGGTGAAGGTTTATCAAGAGAGAAAAACTCTAGCACATGCCTTGAACGACACTAAAACTGCTGTGAAGCAATTGAATAATTTGGTAACAGCGCTTCTTATAACAGTAACGGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTCGTTTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAACGCTTGCAAGACTACATTTGAAGCTCTAATTTTTGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTCTTGGCAACAAAGCCCATCAGTAACTACTACAGAAGTCCAGACATGAGCGAGACCATCGAATTCTCGATCGGTTTTGCAACGCCACTAGAGAGGATTGGAGCCATGAAAGAAAAAATAAAGAGGTATTTGGAGAAAAATCCACAACACTGGCGTCCAAATCATCTTATGGTGGTGAAAGAGATCGAAAACGTGAATGAGATAAAGATTGCTCTTTATTCGACCCACACCATGAATTATCAAGACTATGGCGAGAAGATCAAACGAAGATCCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAGCTGAAGATCAACTACAATCTTCTGCCTCAAACAATTCATCTCTTTCCGGTTGAAGAGCACTAA 2130 41.31 MDVNGNKPLKVVRRSSSQKEGENEVVVEISTSSVVSSKETRDRDDYSVLNQNRVDSQNKQSTGSSIGHGYDSHLPPTANKPLKIPSSNGTLTPRRSLKRSLLSRPKSRFGEQPRYIDSEDMFEENHESSREQIGATSSRSSALNTPKAQPEEEDEEDIVKTEQLNKKHKKWKVKTMINLTVNRLKNCFFWGLKVWKWCLLATVILCGLIFTHWAMNVVRKVLYFVYGLKKSVQVTLWLTLVLVTWVSLFNRSNHRSSRTIGKILDAITWTLVALLIGAVLWLVKTLLLKILASKFHKDRFFDRIQESIFHHHVLQTLLGSPLMQGAESAAKFSCCRFSLKSKKSDHKKVIDMGKIHQLQREKVSAWTMKVLVEAVTSSAMSISQILDESYYNVGDGEIADEMEIASIVASKILRNVALPGKKFIQEEDLLKFMVKEEIDLVLPNFEVDETRKINKKALRNWVVKVYQERKTLAHALNDTKTAVKQLNNLVTALLITVTAVIWLLLMEIATSKVLVFLLSQLAVAAFMFGNACKTTFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMSETIEFSIGFATPLERIGAMKEKIKRYLEKNPQHWRPNHLMVVKEIENVNEIKIALYSTHTMNYQDYGEKIKRRSELVMELKRIFEELKINYNLLPQTIHLFPVEEH 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23524653 23527574 + PI0006678.1 Cmetu07g1894 362375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1894 709 MobiDBLite consensus disorder prediction 50 68 - -
Cmetu07g1894 709 MobiDBLite consensus disorder prediction 81 97 - -
Cmetu07g1894 709 Pfam Mechanosensitive ion channel 488 693 IPR006685 GO:0016020|GO:0055085
Cmetu07g1894 709 PIRSF Memb_At2g17000 10 708 IPR016688 -
Cmetu07g1894 709 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 13 703 IPR016688 -
Cmetu07g1894 709 FunFam Predicted mechanosensitive ion channel 547 596 - -
Cmetu07g1894 709 MobiDBLite consensus disorder prediction 1 156 - -
Cmetu07g1894 709 Gene3D - 547 596 IPR023408 -
Cmetu07g1894 709 MobiDBLite consensus disorder prediction 110 130 - -
Cmetu07g1894 709 MobiDBLite consensus disorder prediction 22 36 - -
Cmetu07g1894 709 SUPERFAMILY Sm-like ribonucleoproteins 536 596 IPR010920 -
Cmetu07g1894 709 MobiDBLite consensus disorder prediction 131 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1894 K22048 - - csv:101216955 1152.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0475 Cmetu-Chr7:23539569 Cmetu07g1894 Cmetu-Chr7:23524653 5.50E-246 dispersed
Cmetu07g1894 Cmetu-Chr7:23524653 Cmetu11g1342 Cmetu-Chr11:11637438 5.80E-113 dispersed
Cmetu07g1894 Cmetu-Chr7:23524653 Cmetu07g0462 Cmetu-Chr7:23533050 7.30E-233 tandem
Cmetu02g0585 Cmetu-Chr2:2471372 Cmetu07g1894 Cmetu-Chr7:23524653 6.80E-160 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0130 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.2 7.5e-152 534.3
Cmetu06g1028 . 62 729 Mechanosensitive Ion Channel Family AT5G10490 58.2 2.0e-192 669.5
Cmetu03g1755 . 10 668 Mechanosensitive Ion Channel Family AT5G10490 54.4 2.6e-179 625.9
Cmetu03g1755 . 10 648 Mechanosensitive Ion Channel Family AT1G58200 53.4 3.6e-181 632.1
Cmetu06g1028 . 34 700 Mechanosensitive Ion Channel Family AT1G58200 52.8 1.5e-174 610.1
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G53470 56.1 1.8e-249 859.4
Cmetu01g0333 . 92 953 Mechanosensitive Ion Channel Family AT1G53470 51.0 1.0e-239 827.0
Cmetu11g1342 . 43 884 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.8e-237 817.8
Cmetu01g0333 . 60 953 Mechanosensitive Ion Channel Family AT1G78610 55.4 5.1e-273 937.6
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G78610 59.3 9.9e-269 923.3
Cmetu11g1342 . 217 891 Mechanosensitive Ion Channel Family AT2G17000 61.0 5.1e-225 778.1
Cmetu01g0333 . 267 941 Mechanosensitive Ion Channel Family AT2G17000 58.7 2.4e-222 769.2
Cmetu11g1342 . 1 668 Mechanosensitive Ion Channel Family AT2G17010 50.2 6.1e-165 578.2
Cmetu02g0585 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 9.0e-194 674.1
Cmetu07g1894 . 72 703 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.1e-178 622.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57