Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1933 ATGGAAAAAACAGCTGATTTGTCTCGTTGTGGTTTCATGAGAGGGATTTTCCAGCGACGGTGTAAATGGTTGAAGAAATCCTCTGTACATTCATTACCCACAAACACAACCGTAAATCTCAACTTAAAACAACCCAAAATTGATAACCCAACAACGCAATATCGGATCTCTGAAGCACCAACATCCAGAAATTCTGTAGAACAGGATCAAAAGAACTTCAAGAAACTCACTTTATTAGACCAACCAAGACCTTCAATTTCTCAACAAAAGATTCAAAGTAGAAGGCCTTCTGACGCTGCAAGAAGCTCCACATCATCTTCCAATGGCTCTGCTTTGAGCAGACCCATGAACGAACCCAAACCCCACATTCGAATTTCTTTAAGTAATGGTGTGGTCTTGGGTAATTTGAAGCAAATTGGAAGTGGGAATTTGTCGGCAAACAACAGTCCAAGGCTTATTAAAGAAATGAACTCAAGTCCAAAACTTGGAGGAAGTGGAAGTAGTACAGGTAGTAACAACATGGGGAACATTATTCGGAGAAATTCATGTGAATTTCGACAAATTCGAGGTAGATTAGAGCCAGATGTTTTGAAAGCCATGGGAAATGAAGCTTATAAAAAGGGAAACTATGAAGAAGCATTGACCTTTTATGACAGAGCAATAGATTTGGATTCAGAGAATGCTGTTTATTATAGCAACAAAGCTGCTGCTTTGATTGCCTTAGATCGTTTGATGGAAGCCATTGAAGAATGCAAAAAAGCATTAAAGTTTCAACCTTCTTACCAAAGAGCTCATCATCGTTTAGCCACTACCTACCTCAGAATTGGAGAGCCTGAGAAAGCTTTGGATCACATGGAACAATCTGGCCCTTACAGCGATATAAATGACATTAACAAAGCTCGAACTCTTCGGAATTGCCTGAATAAGTGTAATGAAGCAAGAAAGTTACAAGAATGGGAGATTCTGTTAAAGGAAACCCAATATGCAATTTCCTCTGTTTCTAATTCAGCTTATAAACTCTATGCCTTTCAAGCTGAGGCCTTATTGAAACTCCATAGACATCAAGAGGCATATTGTATTTACCAAAAGGGTCGAACCCTTAGAACCAACTCTCTAATTAAATCCTTTAGTTTATCCGATAGTGCTCTTCTTTTATCCATCGAGGCACAAGTTTACATGACGATTGGCAGATTTGAGGAAGCAGTAGCAGCAGCAGAACAATCAACACAGCTTGATCCAACTAACAAGGAAGGAATTAGAGTTGCAAAATGGGCTAAAGTTGTTTCATCAGCTCGATTGAGAGGCAATTTACTTTTCAAAGAATCAAGATTCTCTGAAGCTTGTATTGCATATAGTGAAGGACTAGAAAACGACCCGTATAACTCGATTTTGTTATGCAATCGAGCCGCTTGCCGATCGAAGCTCGGTCAGTATGAGAAAGCTGTTGAAGATTGTACTGCTGCACTTCATGCACAACCATCTTACAGCAAAGCTAGACTGCGCAGGGCTGATTGCAATGCTAAAATGGAAAGATGGGAGGCTTCAATTCAAGATTATGAGGTCTTGATAAGAGAAACACCAGGAAATGAAGAAGTAGGGAGGGCTTTGTTTGAGGCACAGATTCAACTCAGGAAGCAACATGGTGAAGATGTAAAAGACTTGAAATTTGGGTCTAATTTGGTATCAATTTCTAGCTATGAGCATTTTAGACACCTTGTTACTTCTCCTGGGATGTCTGTGGTTCTGTTCTTCAACAAAGGCAACAAAAAACAGGGGATCGAAGTGTTTGAGCAGGTTTACAAGAGGTTTCCATCGGTCAACTTTCTCAAGGTGGAGATAGAAGACCATCCTTATTTGGCAAAGTTGGAGAATGTGAGCTCAATTCCAAGTTTTAAAATATATAGAAATGGAACAACAGTGAAGGAGATTCCAGCTTCTAAACCCCATTCATTAGAAAGTTTAGTGAAGATGTACAGCAGTTAA 1983 39.54 MEKTADLSRCGFMRGIFQRRCKWLKKSSVHSLPTNTTVNLNLKQPKIDNPTTQYRISEAPTSRNSVEQDQKNFKKLTLLDQPRPSISQQKIQSRRPSDAARSSTSSSNGSALSRPMNEPKPHIRISLSNGVVLGNLKQIGSGNLSANNSPRLIKEMNSSPKLGGSGSSTGSNNMGNIIRRNSCEFRQIRGRLEPDVLKAMGNEAYKKGNYEEALTFYDRAIDLDSENAVYYSNKAAALIALDRLMEAIEECKKALKFQPSYQRAHHRLATTYLRIGEPEKALDHMEQSGPYSDINDINKARTLRNCLNKCNEARKLQEWEILLKETQYAISSVSNSAYKLYAFQAEALLKLHRHQEAYCIYQKGRTLRTNSLIKSFSLSDSALLLSIEAQVYMTIGRFEEAVAAAEQSTQLDPTNKEGIRVAKWAKVVSSARLRGNLLFKESRFSEACIAYSEGLENDPYNSILLCNRAACRSKLGQYEKAVEDCTAALHAQPSYSKARLRRADCNAKMERWEASIQDYEVLIRETPGNEEVGRALFEAQIQLRKQHGEDVKDLKFGSNLVSISSYEHFRHLVTSPGMSVVLFFNKGNKKQGIEVFEQVYKRFPSVNFLKVEIEDHPYLAKLENVSSIPSFKIYRNGTTVKEIPASKPHSLESLVKMYSS 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19065325 19068931 + PI0008410.1 Cmetu07g1933 362414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1933 660 SMART tpr_5 228 261 IPR019734 GO:0005515
Cmetu07g1933 660 SMART tpr_5 496 529 IPR019734 GO:0005515
Cmetu07g1933 660 SMART tpr_5 462 495 IPR019734 GO:0005515
Cmetu07g1933 660 SMART tpr_5 338 371 IPR019734 GO:0005515
Cmetu07g1933 660 SMART tpr_5 382 415 IPR019734 GO:0005515
Cmetu07g1933 660 SMART tpr_5 194 227 IPR019734 GO:0005515
Cmetu07g1933 660 SMART tpr_5 428 461 IPR019734 GO:0005515
Cmetu07g1933 660 MobiDBLite consensus disorder prediction 75 122 - -
Cmetu07g1933 660 MobiDBLite consensus disorder prediction 81 114 - -
Cmetu07g1933 660 Pfam Tetratricopeptide repeat 474 529 - -
Cmetu07g1933 660 SUPERFAMILY Thioredoxin-like 551 647 IPR036249 -
Cmetu07g1933 660 Pfam Tetratricopeptide repeat 389 415 IPR019734 GO:0005515
Cmetu07g1933 660 Gene3D Tetratricopeptide repeat domain 193 548 IPR011990 GO:0005515
Cmetu07g1933 660 SUPERFAMILY TPR-like 431 546 IPR011990 GO:0005515
Cmetu07g1933 660 Pfam Thioredoxin 595 654 IPR013766 -
Cmetu07g1933 660 Pfam TPR repeat 201 238 - -
Cmetu07g1933 660 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 656 IPR044534 -
Cmetu07g1933 660 Gene3D Glutaredoxin 553 659 - -
Cmetu07g1933 660 ProSiteProfiles TPR repeat profile. 382 415 IPR019734 GO:0005515
Cmetu07g1933 660 CDD TRX_family 567 656 - -
Cmetu07g1933 660 SUPERFAMILY TPR-like 194 416 IPR011990 GO:0005515
Cmetu07g1933 660 ProSiteProfiles TPR repeat profile. 194 227 IPR019734 GO:0005515
Cmetu07g1933 660 ProSiteProfiles TPR repeat region circular profile. 194 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1933 K09527 - - csv:101206173 1222.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0117 Cmetu-Chr5:4631570 Cmetu07g1933 Cmetu-Chr7:19065325 1.20E-07 dispersed
Cmetu06g0783 Cmetu-Chr6:28238585 Cmetu07g1933 Cmetu-Chr7:19065325 2.00E-10 dispersed
Cmetu07g0945 Cmetu-Chr7:3847187 Cmetu07g1933 Cmetu-Chr7:19065325 2.90E-102 dispersed
Cmetu07g1895 Cmetu-Chr7:21593524 Cmetu07g1933 Cmetu-Chr7:19065325 4.90E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39