Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1959 ATGACTACGCCATCTTCTCCACAAGAAGTTGTCCTTGCCAGCTCTCCTGACGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGCTTTAACAGTAGCCGTTCGCCTCGTCGTGGCATCACCCGAGCTGGGAAAAGTTCCATAGCTGTCTCCCACATTTGCCCTGTCACTGCTTCAGGTTCGATCCATATTTACAATTGGTGGACTTCATCTGCCTTCCAATGCCTCACTATCGCTGAACCCGTTGCCCCTCTCACAGCCACCCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTACATCCATATTCTCTCTCTTCCATCAGGGGATGTTCTCAACTCTCTACCTGCACACAAAAAACCAGTCTCTTGCCTTAAACTTAGTGCCGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCACGATTGTTATCATGCCAATCTTTCAACTTGTACAAGCCAAACCACAAGAAAATGCAACCGAACACATTCTGCATCAGTTTTTAGCACATACTGATTCAGTGACTTCCATTTACTCGGGCATGGGGATATCCAGTACCCAAATAGTCTCCTGCTCATTGGATGGCAGATGCAAATTTTGGAGCTTGCCCTCAGGAACCATCTTGCACACCGTGGTATTCCCTTGTGCCATTTTCAATGTGGTCCTAGACCCATCAGAGACAGAATTTTTCGCTGCAGGATCTGATGGCTTGGTGTACAAGGGATCGTTGAGACATAACAACAAACATCTCAGGGACACAGACTATGAACTATTTCCACAAATCTCCAATGACTTAGTGTATAAGCGCTCATTGAGGCATAAAAGCAAACACCTAACAGACACGAGCTCTGAACTAATTCCATGGTCGCCAAAGCACGAGGCTGCAGTTGTTTCTATAGTCATAGTAAACGAAGGAAAGCACTTGATATCTGCAGCAGAAGATGGGAGCATCTGGATCTGGGAAGTGACGAAAGGGCAGGTCATAATGGCCCTTGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATGGCCACAGAAAGAAGCCATGGGAAAGAACAGTGTGTCAGAACAGACAGCCATGGAAGAGAAATGGAAATTAGTGAGAGGTTCAGATTACCCATTAAAATGTTGGGGTTGTCAATAAAACAAACAGTTGATATGCAAGGCGAGCTGGCGGCGGCCGGAAGCGACGTGAGGAGAGCCATTGAGATGCTGGAATCTGCCATTGCTGTGTATGAGAAGATGTTGGAATTAATCCTCAAGGAAGCCGAAGCAAGCTACAATCAAAGAGAAGAAACACAAGGATAG 1329 46.88 MTTPSSPQEVVLASSPDGPIVAYDASTGTPLASFNSSRSPRRGITRAGKSSIAVSHICPVTASGSIHIYNWWTSSAFQCLTIAEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKPVSCLKLSADGSLLISGGDDGTIVIMPIFQLVQAKPQENATEHILHQFLAHTDSVTSIYSGMGISSTQIVSCSLDGRCKFWSLPSGTILHTVVFPCAIFNVVLDPSETEFFAAGSDGLVYKGSLRHNNKHLRDTDYELFPQISNDLVYKRSLRHKSKHLTDTSSELIPWSPKHEAAVVSIVIVNEGKHLISAAEDGSIWIWEVTKGQVIMALENEMGSISDLVMATERSHGKEQCVRTDSHGREMEISERFRLPIKMLGLSIKQTVDMQGELAAAGSDVRRAIEMLESAIAVYEKMLELILKEAEASYNQREETQG 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7568425 7569753 - PI0001459.1 Cmetu07g1959 362440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1959 442 Gene3D - 269 404 IPR015943 GO:0005515
Cmetu07g1959 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 151 - -
Cmetu07g1959 442 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 9 341 IPR011047 -
Cmetu07g1959 442 Gene3D - 2 249 IPR015943 GO:0005515
Cmetu07g1959 442 SMART WD40_4 76 111 IPR001680 GO:0005515
Cmetu07g1959 442 SMART WD40_4 167 208 IPR001680 GO:0005515
Cmetu07g1959 442 SMART WD40_4 211 249 IPR001680 GO:0005515
Cmetu07g1959 442 SMART WD40_4 114 153 IPR001680 GO:0005515
Cmetu07g1959 442 SMART WD40_4 289 328 IPR001680 GO:0005515
Cmetu07g1959 442 Coils Coil 409 429 - -
Cmetu07g1959 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 333 - -
Cmetu07g1959 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 337 IPR001680 GO:0005515
Cmetu07g1959 442 Pfam WD domain, G-beta repeat 171 208 IPR001680 GO:0005515
Cmetu07g1959 442 Pfam WD domain, G-beta repeat 117 151 IPR001680 GO:0005515
Cmetu07g1959 442 ProSitePatterns Trp-Asp (WD) repeats signature. 315 329 IPR019775 -
Cmetu07g1959 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 151 IPR001680 GO:0005515
Cmetu07g1959 442 PANTHER WD-REPEAT PROTEIN 18 8 422 IPR045227 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1959 K14829 - - csv:101211650 803.897
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00493 Csa01g00955 Chy12g01177 . . . . . . . . . Sed08g2444 . . . . . . Cpe09g00968 . Bhi08g01467 Tan05g2944 Cmetu07g1959 . . . . Cla03g00346 Cam03g0364 Cec03g0353 . . Cmu03g0970 Cre03g0662 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013793 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 25