Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g2000 ATGACGTCGGGGACTCGGCTACCGACATGGAGGGAGCGGGAGAACAACAAAAGAAGGGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCTGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAGCATTGCGACAACAACGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTTGAACCTGATGGCACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCCGCAGCTGCAAGCCCGTACACATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCTAGTCCAGCATCATCCTCATATGTCGGTAATCCAAATGCCGATGGAAGTTCACTTATCCCCTGGCTCAAAAACCTTTCGACGTCATCATCTTCGGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCTGTTACTCCTCCTCTAAGTTCCCCAACTGCTAGAACACCCAGACTCAAAGCTGACTGGGAAGACCAATCTGTCCTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCCACTCCACCAAGTCCTGGGCGTCAGATTGTTCCCACTCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTCTCGACGAATCCATTTGGTTTCAAAGAAGCAGCAATCACTGGTGGAGGATCTCGCATGTGGACCCCTGGCCAAAGTGGGACCTGCTCTCCTGCCATTGCAGCAGGCTCCGATCACACTGCAGATATTCCTATGTCAGAAGTGATCTCTGATGAGTTCGCCTTTGGAAGCAATGCAGCAGGTATAGTGAAGCCATGGGAAGGAGAAATAATTCATGAGGAATGTGGTTCAGATGACTTGGAGCTCACTCTTGGCAACTCAAGGACCAGGTAA 978 49.9 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYTSHQPSPCASFNPSPGSSSFPSPASSSYVGNPNADGSSLIPWLKNLSTSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSQPSSTPPSPGRQIVPTPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAITGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGEIIHEECGSDDLELTLGNSRTR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7350818 7355388 + PI0008543.1 Cmetu07g2000 362481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g2000 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cmetu07g2000 325 MobiDBLite consensus disorder prediction 1 20 - -
Cmetu07g2000 325 MobiDBLite consensus disorder prediction 89 122 - -
Cmetu07g2000 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Cmetu07g2000 325 MobiDBLite consensus disorder prediction 87 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g2000 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g2000 Cmetu-Chr7:7350818 Cmetu12g0459 Cmetu-Chr12:5830049 1.40E-119 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0632 . 1 310 BZR Transcription Factor Family AT1G75080 59.4 1.4e-88 323.6
Cmetu08g1008 . 28 319 BZR Transcription Factor Family AT1G75080 58.9 1.8e-80 296.6
Cmetu03g0632 . 1 311 BZR Transcription Factor Family AT1G19350 59.1 1.3e-86 317.0
Cmetu08g1008 . 28 317 BZR Transcription Factor Family AT1G19350 59.2 6.3e-78 288.1
Cmetu08g1008 . 6 319 BZR Transcription Factor Family AT3G50750 57.4 2.6e-77 285.8
Cmetu03g0632 . 1 310 BZR Transcription Factor Family AT3G50750 51.4 9.0e-62 234.2
Cmetu07g2000 . 77 325 BZR Transcription Factor Family AT4G18890 54.9 5.0e-49 191.4
Cmetu12g0459 . 80 327 BZR Transcription Factor Family AT4G18890 51.8 1.0e-46 183.7
Cmetu07g2000 . 1 325 BZR Transcription Factor Family AT1G78700 72.5 3.3e-116 415.2
Cmetu12g0459 . 1 327 BZR Transcription Factor Family AT1G78700 68.0 4.2e-103 371.7
Cmetu08g1008 . 28 200 BZR Transcription Factor Family AT4G36780 79.7 8.3e-65 244.2
Cmetu03g0632 . 33 204 BZR Transcription Factor Family AT4G36780 62.6 1.2e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8303 PF05687 BES1_N 6.80E-66 No_clan Cmetu TF