Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g2088 ATGGTCTGCGAAATGGAGAATGGTGTTATTGAAGATATGGACATTGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGTTCTTCACAACTACAATACCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCAGTGCGCCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCCATTTCTATTTTGGAAGAAGCTTGTGATATATGGCAAGATATTCCAACGAGGAAAACTGATTTCGTCTTTCAAAGTAAGAGAGTCGAAATTGATGCAGAGTATGATACAGTGACATACTGGAAGCAACGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCTGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCTTCACCAGTTGAGGAGTTGTCACAGATTCTTAAAAGAGCCGACAATTTTTTACATTTTGTTCTGCAGAATGCACCTGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGGTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTCGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAGATTCAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTATGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTCCGTGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCATTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACGACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGATCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTACAGACTGCTGCCGCATCATTGCGAAAATTCTTAGTTCTGGAGGGGCGTATAGCAGATGATGTCCCTATAGAGGTCATTGGAGATGTTCTTAGGATACGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCACAAGAAATCAACGGCCGATAACTCAACAGTTCCAGTGAATTCTTTGCAAGATGGAACATGTCTTCCAGCCTCTCAAAATGGTTTGTGTGGCCAAAAACACAGCGACAGAAATCATTTGCATTGTGATGGACCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAACAGAGAAAACAAATCGTGTTCATCCGAAAGGATGGTATGGATACGCTGTGATGTGTATGACACAGGAATTGGAATACCGGAAAATGCGTTACCAACCCTTTTTAAGAGGTACATGCAAGCCAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCATACAAGGTTTCAACCACCTGCAGTCCTTCGGATGATTCAGACGAGATCTCGGATGACGAATCTACAAACGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTACGCTATCATCTTCTAATGGATCCACAAGGATCCCAAACTCATTGTTGCATACAACTGGGTATCCCACCTCAAACAAACTCAATGGAATAACTGAAGGTGGTCCTTATCCTATTCCCTCAAACATCGATGCTCGTTACGCCAATGCTGATGTTGTAACCTCAAGAGAATCACAATGTTCATCAAGTCATGTAAACGCAAATCTTGATAACCAAAACCAACCAGACACAAATGCTCGGTTGCAAAATGTCGGTGATGTGAATTCCCTGCCCAAATCAGAAACAACAAAGTTAGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAGGGAAAAGAGAGATCCGAGGCAATTAATCACTGCAGAAATAGCAGTAGTAGTCCTGAAGTAACATTGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAGTCCATGATGAAGAAGTTCGGGCAAAAAATTGACGTTGTAACTAACGGCATTGAAGCTGTTCGAGCAGTCCAAAGACGTTCTTACGATCTCATTCTCATGGTATGTTCGCTTTACAAATCTAGAATCACATATGTTCTGGATTCAAAAAATTCTTTCCAGTGCTCTTAG 2757 40.91 MVCEMENGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEEACDIWQDIPTRKTDFVFQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVPVNSLQDGTCLPASQNGLCGQKHSDRNHLHCDGPGTPSKSETTMNGNRENKSCSSERMVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDEISDDESTNDEMTEGFFQFQPHSFSTLSSSNGSTRIPNSLLHTTGYPTSNKLNGITEGGPYPIPSNIDARYANADVVTSRESQCSSSHVNANLDNQNQPDTNARLQNVGDVNSLPKSETTKLEDRLEKQSNKLQKTDQGKERSEAINHCRNSSSSPEVTLALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMVCSLYKSRITYVLDSKNSFQCS 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23757255 23763960 + PI0001091.1 Cmetu07g2088 362569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g2088 918 Gene3D - 336 434 - -
Cmetu07g2088 918 SUPERFAMILY CheY-like 847 896 IPR011006 -
Cmetu07g2088 918 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cmetu07g2088 918 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cmetu07g2088 918 SMART HKATPase_4 482 672 IPR003594 -
Cmetu07g2088 918 FunFam Histidine kinase 5 213 348 - -
Cmetu07g2088 918 ProSiteProfiles Response regulatory domain profile. 848 918 IPR001789 GO:0000160
Cmetu07g2088 918 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Cmetu07g2088 918 FunFam Putative histidine kinase 5 359 436 - -
Cmetu07g2088 918 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cmetu07g2088 918 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cmetu07g2088 918 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cmetu07g2088 918 MobiDBLite consensus disorder prediction 766 836 - -
Cmetu07g2088 918 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cmetu07g2088 918 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cmetu07g2088 918 Coils Coil 181 208 - -
Cmetu07g2088 918 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cmetu07g2088 918 Gene3D PAS domain 205 335 - -
Cmetu07g2088 918 MobiDBLite consensus disorder prediction 566 586 - -
Cmetu07g2088 918 Gene3D - 435 676 IPR036890 -
Cmetu07g2088 918 MobiDBLite consensus disorder prediction 572 586 - -
Cmetu07g2088 918 Coils Coil 92 112 - -
Cmetu07g2088 918 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cmetu07g2088 918 Coils Coil 342 362 - -
Cmetu07g2088 918 MobiDBLite consensus disorder prediction 800 830 - -
Cmetu07g2088 918 CDD REC_hyHK_CKI1_RcsC-like 849 896 - -
Cmetu07g2088 918 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cmetu07g2088 918 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 12 896 - -
Cmetu07g2088 918 MobiDBLite consensus disorder prediction 766 799 - -
Cmetu07g2088 918 Gene3D - 843 900 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g2088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g2088 Cmetu-Chr7:23757255 Cmetu09g0510 Cmetu-Chr9:5665329 1.10E-36 dispersed
Cmetu07g2088 Cmetu-Chr7:23757255 Cmetu10g1485 Cmetu-Chr10:10089500 9.30E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0019 . 5 1168 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1410.6
Cmetu09g0510 . 103 1066 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1330.5
Cmetu10g1485 . 4 847 Histidine Kinase Gene Family AT2G01830 71.1 0.0e+00 1135.6
Cmetu11g2204 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.4e-269 926.4
Cmetu11g0071 . 1 936 Histidine Kinase Gene Family AT2G01830 50.9 1.5e-258 889.8
Cmetu07g2088 . 1 898 Histidine Kinase Gene Family AT5G10720 56.5 2.0e-251 865.9
Cmetu03g2257 . 1 1078 Histidine Kinase Gene Family AT1G09570 76.2 0.0e+00 1718.7
Cmetu03g0436 . 3 1146 Histidine Kinase Gene Family AT1G09570 71.4 0.0e+00 1631.3
Cmetu01g1663 . 17 1109 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1214.5
Cmetu06g1585 . 34 1098 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1156.4
Cmetu06g1585 . 13 1039 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1620.9
Cmetu12g0178 . 32 1054 Histidine Kinase Gene Family AT2G18790 59.9 0.0e+00 1241.5
Cmetu01g1663 . 25 1066 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Cmetu03g0436 . 22 1077 Histidine Kinase Gene Family AT2G18790 51.0 3.8e-308 1054.7
Cmetu03g2257 . 21 1012 Histidine Kinase Gene Family AT2G18790 50.2 5.1e-289 991.1
Cmetu01g1663 . 17 1113 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1382.9
Cmetu06g1585 . 21 1100 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1111.3
Cmetu06g1585 . 3 1100 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1664.8
Cmetu12g0178 . 39 1116 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1283.5
Cmetu01g1663 . 25 1112 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Cmetu03g2257 . 8 1073 Histidine Kinase Gene Family AT4G16250 50.1 8.1e-306 1047.0
Cmetu12g0178 . 16 1117 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1383.6
Cmetu06g1585 . 38 1098 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1238.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8309 PF02518 HATPase_c 9.10E-28 CL0025 Cmetu TR