Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g2119 ATGGCCACCGGCGTCCTTCTCCGTTCTCTTCGACGTCGCGATTTAGCCTCCTCCTCCCTTTCAGCTTACCGATCCTTGACAAGTAATGCCAAGCCGTCATGGGGTAACTCTCACCTTAGTCAGTCATGGGCGAGTTTGTCCAGGCCGTTCAGTTCAAAACCTGCTGGGAATGATGTAATTGGTGTTGACTTGGGTACCACCAATTCTTGCGTTGCTGTCATGGAAGGAAAGGTAAAATCCAAAGTTATTGAAAACTCAGAAGGTGCTAGGACCACGCCATCGGTGGTTGCTTTCAATCAGAAAGGTGAACTGCTTGTAGGAACACCAGCAAAGAGACAGGCAGTGACAAATCCAACAAATACTGTGTTTGGAACCAAGCGTCTGATTGGTAGACGCTTTGATGACCCTCAGACACAGAAGGAAATGAAGATGGTGCCATACAAGATAGTCAAAGCTCCAAATGGAGATGCTTGGGTGGAAGCCAATGGACAGCAGTACTCGCCAAGCCAGATTGGTGCTTTTAGTATATCAAAGGCCGTGATTACTGTTCCAGCTTACTTTAATGATGCACAGAGACAAGCAACAAAGGATGCTGGCAGGATTGCTGGTTTGGAAGTTCTTAGAATTATCAACGAGCCCACTGCTGCTGCACTTTCTTACGGAATGAACAATAAGGAGGGCCTTATTGCTGTCTTTGATCTTGGTGGTGGCACATTCGATGTTTCTATCTTGGAGATATCCAATGGTGTTTTCGAGGTGAAAGCAACAAATGGTGACACATTCTTGGGTGGAGAAGATTTTGATAATGCCCTTTTGGATTTCCAGCTTGCCTTGCAGAGGCTTAGAGAAGCTGCAGAAAAGGCAAAGATTGAACTATCATCTACATCACAGACTGAAATAACCTGCCATTTATCACTGCTGATCAACTGGACCAAGGCCCCATGTAAAAATTGTTTGAAGGATGCCAGCATTTCTATCAAAGAAGTGGATGAAGTAACTGCTTCTTCTGGATGTTACCCACTATCGCTTGGTATCGAGACACTTTGTGGTATCTTTACCAGGTTGATCAGTCGGAACACGACCATTCCAACTAAGAAGAGTCAGGTATTCTCAACTGCAGCTGACAATCAGACTCAGGTCGGTATCAAGGTATTGCAAGGTGAGAGGGAAATGGCTTCTGACAACAAGCTTCTAGGGGAATTTGAGTTAGTGACATTTGACATTGACGCCAATGGCATTGTTACTGTCTCTGCAAAGGACAAGTCCACTGGTAAAGAACAACAAATCACCATCAGATCTTCTGGAGGACTCTCAGAGGATGAAATTGACAAAATGGTCAAGGAGGCAGAGCTGCACGCCCAGAAGGATCAAGAGAGGAAAGCTCTTATTGACATCAGAAACAGTGCAGATACTACCATCTACAGCATCGAGAAAAGCTTGGTTGCCAAAGAAATCGAGGATGCAGTGGCAGATTTGAGGAAGGCAATGTCTGAAGACAACCTCGAAGAGATCAAGTCAAAATTGGATGCTGCAAACAAAGCTGTATCCAAGATTGGTCAGCACATGGCTGGTGGTTCAGGTGGTGGTGCCTCTGGAGGAGGATCCCAGGGTGGTGAACAAGCATCTGAAGCTGAGTACGAAGAGGTGAAGAAATAA 1656 45.59 MATGVLLRSLRRRDLASSSLSAYRSLTSNAKPSWGNSHLSQSWASLSRPFSSKPAGNDVIGVDLGTTNSCVAVMEGKVKSKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQIGAFSISKAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFQLALQRLREAAEKAKIELSSTSQTEITCHLSLLINWTKAPCKNCLKDASISIKEVDEVTASSGCYPLSLGIETLCGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIDKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLVAKEIEDAVADLRKAMSEDNLEEIKSKLDAANKAVSKIGQHMAGGSGGGASGGGSQGGEQASEAEYEEVKK 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 118437 121832 + PI0024769.1 Cmetu07g2119 362600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g2119 551 Gene3D - 51 227 - -
Cmetu07g2119 551 Pfam Hsp70 protein 59 303 IPR013126 GO:0005524|GO:0140662
Cmetu07g2119 551 Pfam Hsp70 protein 339 522 IPR013126 GO:0005524|GO:0140662
Cmetu07g2119 551 Gene3D Actin; Chain A, domain 4 274 322 - -
Cmetu07g2119 551 FunFam Molecular chaperone DnaK 60 227 - -
Cmetu07g2119 551 SUPERFAMILY Actin-like ATPase domain 59 225 IPR043129 -
Cmetu07g2119 551 Coils Coil 482 514 - -
Cmetu07g2119 551 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 340 452 IPR029047 -
Cmetu07g2119 551 SUPERFAMILY Actin-like ATPase domain 226 356 IPR043129 -
Cmetu07g2119 551 FunFam Molecular chaperone DnaK 437 526 - -
Cmetu07g2119 551 ProSitePatterns Heat shock hsp70 proteins family signature 1. 62 69 IPR018181 -
Cmetu07g2119 551 ProSitePatterns Heat shock hsp70 proteins family signature 2. 231 244 IPR018181 -
Cmetu07g2119 551 Gene3D - 454 524 IPR029048 -
Cmetu07g2119 551 Coils Coil 271 298 - -
Cmetu07g2119 551 PANTHER HEAT SHOCK PROTEIN 70KDA 59 334 IPR013126 GO:0005524|GO:0140662
Cmetu07g2119 551 PRINTS 70kDa heat shock protein signature 179 199 - -
Cmetu07g2119 551 PRINTS 70kDa heat shock protein signature 87 99 - -
Cmetu07g2119 551 PRINTS 70kDa heat shock protein signature 58 71 - -
Cmetu07g2119 551 PRINTS 70kDa heat shock protein signature 237 247 - -
Cmetu07g2119 551 PRINTS 70kDa heat shock protein signature 110 118 - -
Cmetu07g2119 551 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 338 470 IPR029047 -
Cmetu07g2119 551 Gene3D - 126 168 - -
Cmetu07g2119 551 Gene3D - 228 339 - -
Cmetu07g2119 551 MobiDBLite consensus disorder prediction 519 551 - -
Cmetu07g2119 551 FunFam Chaperone protein HscA homolog 228 286 - -
Cmetu07g2119 551 FunFam Heat shock protein 9 123 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g2119 K04043 - - csv:101216102 880.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g2119 Cmetu-Chr7:118437 Cmetu09g0163 Cmetu-Chr9:1374592 6.30E-99 dispersed
Cmetu07g2119 Cmetu-Chr7:118437 Cmetu01g0105 Cmetu-Chr1:17144736 1.70E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g863 Blo02g00878 . . . Bpe07g00342 . . . . . . . . . . . . . . . . . . . Cla10g00936 Cam10g0957 Cec10g0995 Cco10g0954 . . Cre10g1140 . . . . . . . . . . . . . . . . Sed07g1161 . . . . . . . . Bhi11g01071 Tan01g0574 Cmetu07g2119 . . Mch10g0385 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004230 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 42