Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g2129 ATGAACCAACAAGAAACTGAAGAACATCAATCAGTACAAATCTCTCAGTTGTACAATGGATTATACATCCAAATGCTACCCCAACAAGGTAATTTGGGTGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAACAGAGGCAGCAGCGGGTGGGAAAAAGAGGAAGCTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTTGGGAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGGTTAGCGTCGGAGTTGGGGTTGGATCCTCGGCAGGTCGCTGTGTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAACTTGAGGAGGAGTATTCTAATTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACAGAGATATTGAAGCTAAAAGAACAACTATTAGAAGTAGAGAAAGAGAAAGAGAGGGTAATAATGGGAGAACGGGCCGATGGGCCTTTAAGTAGTAGCAGCCCAAGCCCATCAATGTCAATGGAAGCTATGGAGATGGACCCCATATCCCTTGGGGAAATCTCACCATTATATGAAGAAGATGTGTTTTATTACATGCCTGAAAATTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGA 654 43.88 MNQQETEEHQSVQISQLYNGLYIQMLPQQGNLGESKPRRRRKKNRGSETEAAAGGKKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLLEVEKEKERVIMGERADGPLSSSSPSPSMSMEAMEMDPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYI 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4262273 4265047 - PI0026927.1 Cmetu07g2129 362610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g2129 217 CDD homeodomain 56 112 IPR001356 GO:0003677
Cmetu07g2129 217 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Cmetu07g2129 217 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Cmetu07g2129 217 SMART HOX_1 54 115 IPR001356 GO:0003677
Cmetu07g2129 217 Gene3D - 46 119 - -
Cmetu07g2129 217 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Cmetu07g2129 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 161 IPR045224 GO:0003700
Cmetu07g2129 217 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Cmetu07g2129 217 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Cmetu07g2129 217 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Cmetu07g2129 217 MobiDBLite consensus disorder prediction 28 59 - -
Cmetu07g2129 217 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Cmetu07g2129 217 Coils Coil 103 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g2129 K09338 - - csv:101221080 367.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g2129 Cmetu-Chr7:4262273 Cmetu08g0809 Cmetu-Chr8:21540317 3.00E-44 dispersed
Cmetu07g2129 Cmetu-Chr7:4262273 Cmetu04g0403 Cmetu-Chr4:4714788 1.30E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g927 Blo04g00927 Blo16g00037 Bda04g00064 . . Bpe13g00454 . . Cmo04g00828 . Cma03g00769 Cma07g00504 . Car07g00441 Sed07g1686 Cpe19g00797 . Bhi03g01269 Tan03g1958 Cmetu07g2129 . Hepe04g1489 . . Cla01g01886 Cam01g1978 Cec04g1629 Cco04g1694 Clacu01g1998 Cmu01g1868 Cre04g1550 Cone8ag0797 Cone12ag0756 . Cone9ag1531 Lsi01g00699 . Chy07g01276 Cme08g00826 . Blo06g00125 Bda11g01876 . Bpe10g00106 Bpe06g00054 . Bma06g00130 . Cmo03g00798 . . . . . . . . . . . . . . Cla07g00851 Cam07g0923 Cec07g0983 Cco07g0966 Clacu07g0899 Cmu07g0899 Cre07g1264 . Csa06g03219 Chy02g00668 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002434 2 1 3 1 3 2 2 2 2 2 2 2 3 2 2 1 2 3 3 2 2 2 2 2 2 1 2 3 2 1 61
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8313 PF00046 Homeodomain 4.80E-17 CL0123 Cmetu TF