Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g2167 ATGGGGACATCAGGGACGAAGGACGATATAGAGATGAATAGCGAGGGGGAAGACTTATCACCTGGAATGGATTTGGATACAGATGATGATGATGATTATTATTCTGAGCCAGTCAACATACATGATCTTGGGGAAGCGTTTCTGAAGGATTTCTGTAAGAAGTCATCAATGGCATTTTTTAATCAGTACGGCCTTATCAGTCACCAAATCAACTCGTACAATGACTTCATAAAAAATGGTATTCAGAAGGCCTTTGATTTTTTTGGTGACATTTTAGTTCAGCCAGGATATGACCCCTCTAAGAAAGGAGATGGGGAGTGGAGATATGCTTCAGTGAAGTTTGGTAAGGTAACCCTCGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAACATGACTTATTCATCAAGGATGAAAATAAATATCAGTTTAGAGATATATACTCAAAAGTTAGTCAGCAGCGACAAATTTAAAACTGGAAAAGATCAATATGTCGACAAGGAACCTGTAGAAGGTGCGAGCGACAACAGGGATGTCTTTATTGGCAGGCTACCTGTGATGGTGAATTCTGACCTCTGCTGGATGAAGGATGAGCAGAAACGTGACTGTGAATTTGATCGTGGTGAGCAAATTTGTTTGAGAAGACTCTGGATTTCTAATGTTCAAGGCTGGACCGTGGCATACAGATCAGAAGTTAAGAGAAATAGACTAATTATTAGACTAGTTGAAAATTCCAAGTCTGAAGATCTAAAAAGCAAGGAGAAAGTCCTCAATGTATATTTTTTGTCCACAGAAGTTCCTGTGTGGATTTATTCTTTGCACTTGGTAGATGATCCAACTGTTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTTGATAATGATGATAAGTGGAAAGACTTTCGAAGAGGTAAAAGAGCGTTGACATTTTTGGACAATGAGATTAGAAAGACCAGTTTCCCACCTGCTGAAAAAATTGAAGATTGCCTGAACCTTTATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAAAAGTGTCATTTCCTTGGTTATATGGTTAAATGTCTCCTGCAAGCCTATACTGGCCGTAGGAAATGTGATAATAGGGATGATTTTCGCAATAAGAGATTTGAGTTGGCTGCAGAACTGCTTGAAAGAGAGCTTAAAGTACATATTGCACATGCACGTAGACGCATGGAAAAAGCTTTACAAAGGGACCTCTATGGGGATCGTCAAGTGCGTCCAATAGAACACTATTTGGATGCTTCTATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCGCATGCATTTAAGAGGATGGAAAGGATTTCAGGTGTGGTGGCAACTCTTGGTCGTGCTAATCCCTTGCAGACAATGGCGGAATTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTTGGTGATGCAAGATACCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTTCTCTCCACTCCGGATGGTGAAAATTGTGGGCTTATTAAAAATTTGTCCGGCACAGGACTTGTAAGCTTAAGCACGACGAAGTCGATAGTTCCCACATTGTTTCGCTGTGGAATGGAGAATTTGGTGGACAATACATCTACTTCTCTTAGTGGGAAGTACAAAATTTTTCTCGATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGTTACGAAAGTGAGACGCAAGCGACGAAGTAATCCGTTTCTGCATCAGGTAGAAGTCAAAAGAGATGAACAACTGAAAGAAGTTCGTATATTTTCCGATGCTGGAAGGATATTACGTCCTCTCCTAGTCGTAGAAAACTTAAATAGGATCGACAAGTCTAAGGGAGAAAACTACACTTTTCAATCCCTTTTGGACAAGGGAATAATCGAACTTATTGGAACTGAAGAAGAAGAAGACTGTCGTGTAGCTTGGAGTATTAAGCATCTTATGGAAGATGAAGGGACCACGAAATATTCCCATTGTGAACTTGATATGTCATTTTTATTAGGTTTGAGCTGTGGACTTGTCCCTTTTGCAAATCACGACCATGCCAGGAGGGCTCTGTTTCAATCCCAGAAGCACTCTAATCAAGCTATTGGATTTTCAACAACCAATTCTAACTTTCGTGTGGATACTTTATCCCACCAGTTACACTATCCACAAAGGCCGCTTTTTCGTACAATGACTGCTGATTGCCTTGGAACACCTGGATACCTGTCATCTCACACCGGTATACTACCAAAACCTGAGTTCTATAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCACCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACAGAGCCTCTCTTGAGCGTGGCATGTTTCGGTCTGAGCATACCCGGAGTTACAAGGCCGAGGTTGATAATAAAGAATCTTCAGAGAAGAGGAGAAAATCTGATGACGCAATAAATTTTGGAAAGACTCAAAGTAAAATTGGAAGAGTTGACAGCTTAGACGACGACGGCTTCCCTTATATCGGTGCAAATTTGCAGAGTGGAGACATTGTCATTGGTAGATGTGCGGAATCTGGAGCCGATCACAGTATCAAACTGAAGCACACCGAGAAGGGCATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGACGGGAAGAATTATGCTGTTGTATCCCTCAGACAGGTTCGATCTCCTTGTCTTGGAGACAAGTTTTCAAGTATGCATGGACAAAAGGGAGTTCTGGGGTTTTTGGAGTCTCAAGAGAATTTCCCCTTCACCATCCAAGGGATAGTTCCAGATATTGTTATAAATCCACATGCTTTTCCTTCGCGACAGACTCCTGGTCAACTATTGGAAGCGGCTCTCGGAAAAGGGATCGCTGCTGGCGGTTCTCTGAAATATGCGACGCCTTTCTCAACTCCTTCTGTTGATGCCATTACTGACCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGAAGCGAGAGAGTGTACAATGGCCGAACTGGTGAAATGATGCGATCTCTCATATTCATGGGTCCGACCTTCTACCAGCGCTTAATCCACATGGCTGAAGACAAGGTTAAATTTCGTAACACCGGCCCTGTCCACCCCCTCACCCGACAACCCGTTGCTGACCGAAAGCGTTTTGGTGGGATCAAGTTCGGGGAGATGGAACGTGATTGTCTTATAGCTCATGGTGCTTCCGCCAACTTGCACGAACGTCTGTTCACCCTCAGTGACTCTTCCCAGATGCACGTTTGCCAGAAATGCAAGAATGTTGCTAGTGTGATTCAGCGGTCGGTGGCTGGTGGTCGTAAGATAAGGGGTCCATATTGTCGGGTTTGTGAATCAGTCGATGATATCGTGAGGGTAAATGTACCCTATGGAGCCAAGTTGTTGTGCCAGGAGCTTTTCAGCATGGGTATCAATCTCAAGTTTGAAACACAACTATGTTGA 3504 43.15 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIYSLHLVDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEWVGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23936364 23943142 - PI0004379.1 Cmetu07g2167 362648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g2167 1167 FunFam DNA-directed RNA polymerase subunit beta 1051 1165 - -
Cmetu07g2167 1167 Pfam RNA polymerase Rpb2, domain 2 357 389 IPR007642 GO:0003677|GO:0003899|GO:0006351
Cmetu07g2167 1167 MobiDBLite consensus disorder prediction 811 831 - -
Cmetu07g2167 1167 FunFam DNA-directed RNA polymerase subunit beta 379 567 - -
Cmetu07g2167 1167 Pfam RNA polymerase Rpb2, domain 3 468 525 IPR007645 GO:0003677|GO:0003899|GO:0006351
Cmetu07g2167 1167 Gene3D RNA polymerase alpha subunit dimerisation domain 1051 1165 - -
Cmetu07g2167 1167 FunFam DNA-directed RNA polymerase subunit beta 795 913 - -
Cmetu07g2167 1167 Pfam RNA polymerase beta subunit 64 420 IPR007644 GO:0003677|GO:0003899|GO:0006351
Cmetu07g2167 1167 FunFam DNA-directed RNA polymerase subunit beta 57 230 - -
Cmetu07g2167 1167 Gene3D - 57 557 - -
Cmetu07g2167 1167 ProSitePatterns RNA polymerases beta chain signature. 917 929 IPR007121 GO:0003677|GO:0003899|GO:0006351
Cmetu07g2167 1167 Gene3D - 694 1050 IPR037033 GO:0003677|GO:0003899|GO:0006351
Cmetu07g2167 1167 MobiDBLite consensus disorder prediction 1 31 - -
Cmetu07g2167 1167 Gene3D - 724 913 IPR014724 GO:0003899
Cmetu07g2167 1167 Pfam RNA polymerase Rpb2, domain 6 694 1064 IPR007120 GO:0003677|GO:0003899|GO:0006351
Cmetu07g2167 1167 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 50 1164 - -
Cmetu07g2167 1167 Pfam RNA polymerase Rpb2, domain 5 640 683 IPR007647 GO:0006351
Cmetu07g2167 1167 CDD RNA_pol_B_RPB2 65 1163 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cmetu07g2167 1167 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 55 1161 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cmetu07g2167 1167 Pfam RNA polymerase Rpb2, domain 7 1066 1164 IPR007641 GO:0003677|GO:0003899|GO:0006351
Cmetu07g2167 1167 Pfam RNA polymerase Rpb2, domain 4 564 625 IPR007646 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g2167 K16252 - - csv:101212812 2260.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1629 Cmetu-Chr4:2130991 Cmetu07g2167 Cmetu-Chr7:23936364 5.70E-166 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32