Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g2223 ATGTCAGGAAATTTGGTGTTTGTAGGTGGTAAGAGTGCTATTTTGACTGCTCTGTGTGTTGCATTTGGCTGTCGAGCTAAAGGAACCCAAAGGGCAGCTACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCATGTTGTATTGCAAAATAATGGGGAGGATGCTTTCAAGCATGGAATATATGGAGATGTTATAACCATCGAAAGAAGGATTTCTGAATCTACTAGTGCCATTGTTTTGAAGGATTCTCAAGGAAAAAAGGTTGCGAGTCGGAGGGATGAACTACGAGAGCTAGTAGAGCATTTTAACATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGAAACGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTGGACGATCTGCTGAAAAATATTTTTGATCATTTGAGATCTGCTAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTGAATGAACTGCGAGGAAAAATTAAAAACATGGAGCAAGTAGAAGAAATCTCTCAACAAGTTCAACAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAGCTGGGTCTAGCGGAAAAATTAAGAGAACGCTATATTGAGAAAAAAACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGAAACTCTTACCTTGGCAACAAGAGAGAAGCTTGGACTTGAAGAGGAGCATGGTCGTAAAATAAACTACATCCAAAAGATGGCAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACCCAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGACTGAAGCTGCTAAGTCAACAGTAATGAGGTTGAAAGAGGAGGAGAATGCATTGATGGAAAGTCTGTACAATGGGAGAAATGAAATAAAAAAGATTGCCGAAGAGATTGCAAGTTACGAGAAAAAAACCTATGAATTTTCTCACTCAATTCAAGAGCTCAAGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGACAAAGTCATTCAATTATTACGTGCAATTGAGAGACACCATCAAAGGTTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAATTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCACAAAGATTCTCTTCTTTTGAGGAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTGTCATCTATGACTTTTCAAGACCAGTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAAAGCATCCTACAACCCTTTCTGTCATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATAATGTGGGTAAATCAGTTGCATTTGACCAACGGATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAAACCCAGAAGTGGCAGACTTTGTAGCTCCTTTGACGACCAAATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAACAATGCGAAGAGGAGGTGTCGGAGTGCGGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGAAAGTCACAAGTTGCTGAAACTAGTTCAGTACCTTCATCAAATGTGGATGAGCTTCACCAAGAAATTTCTAAAATTGAAGAGGAGATACAAGAGAATAAGATGCTTCTCGAAAAGTTTAGAGTTAGGATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTCAAAGTATCATTTGAAAATCTGTGTGAGTCAGCAAAAGGAGAAATTGATGCATTTGAAGAGGCTGAGAGAGATATGTTGCAGATTGAAAGAGAATTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAATAAGGTCCTTTTTGATATTAAAGAGGCAGAGAGACAACATCAGGAGCTTGAGCGTCACCGTAAGGAGAGTTATAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCTGAACAACTCAGTGCACAATTAACAAGGCTAAATCAGAGACTTAATAACGAGACCAGAAGATGTTCTGAATCTTTGGAAGACCTGAGGGTGATGTATGAGAAAAAGGAGCGCACAATTATAAGAAAACAACGGACTTATAAAAGTTTTAGAGAGAAGTTGGATGCTTGCCAGAAAGCTCTCGAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGCGGACATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAAATGCCCCAGGACGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGCGGAGAACGATCATTTTCAACTCTATGCTTTGCTTTGGCATTACACGAGATGACAGAAGCCCCATTTCGAGCCATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAGTGGATATTTATCACGCCTCATGACATCGGGATGGTAAAACAAGGAGAAAGAATCAAGAAGCAACAAATGGCAGCTCCTCGATCCTGA 3045 40.1 MSGNLVFVGGKSAILTALCVAFGCRAKGTQRAATLKDFIKTGCSHAVIHVVLQNNGEDAFKHGIYGDVITIERRISESTSAIVLKDSQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDHLRSANALVDDLESTIRPVEKELNELRGKIKNMEQVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAEKLRERYIEKKTQIASMMERTSEVRRMKDELQETLTLATREKLGLEEEHGRKINYIQKMAKRVRLLEQQVQDIHEQHIRNTQAEESEIEEKLKELESETEAAKSTVMRLKEEENALMESLYNGRNEIKKIAEEIASYEKKTYEFSHSIQELKQHQTNKVTAFGGDKVIQLLRAIERHHQRFKKPPIGPIGSHLNLVNGDMWAPAVEIAIGRLLNAFIVTDHKDSLLLRRCANEANYRQLPIVIYDFSRPVLNIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYNVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRKPRSGRLCSSFDDQIKSLEKDALNVKQEAEQCRKRKRVSEEQLRDLEDNLNNAKRRCRSAERFLMSKNLELQDLRKSQVAETSSVPSSNVDELHQEISKIEEEIQENKMLLEKFRVRMKEAEAKAKDLKVSFENLCESAKGEIDAFEEAERDMLQIERELHSAEKEKDHYEGIMTNKVLFDIKEAERQHQELERHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRVMYEKKERTIIRKQRTYKSFREKLDACQKALELRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKQGERIKKQQMAAPRS 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3190757 3206605 - PI0011339.1 Cmetu07g2223 362704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g2223 1014 Coils Coil 274 294 - -
Cmetu07g2223 1014 Coils Coil 302 322 - -
Cmetu07g2223 1014 Coils Coil 597 645 - -
Cmetu07g2223 1014 Gene3D - 701 1009 IPR027417 -
Cmetu07g2223 1014 Gene3D - 8 230 IPR027417 -
Cmetu07g2223 1014 Coils Coil 246 266 - -
Cmetu07g2223 1014 Coils Coil 812 832 - -
Cmetu07g2223 1014 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 10 1013 - -
Cmetu07g2223 1014 Coils Coil 764 784 - -
Cmetu07g2223 1014 SUPERFAMILY Smc hinge domain 384 573 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Cmetu07g2223 1014 Coils Coil 672 755 - -
Cmetu07g2223 1014 Coils Coil 165 205 - -
Cmetu07g2223 1014 Coils Coil 324 358 - -
Cmetu07g2223 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1004 IPR027417 -
Cmetu07g2223 1014 Pfam RecF/RecN/SMC N terminal domain 10 1006 IPR003395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g2223 K22804 - - csv:101208493 1884.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0859 Cmetu-Chr1:25864187 Cmetu07g2223 Cmetu-Chr7:3190757 2.80E-15 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g0859 . 1 1026 Structural Maintenance of Chromosomes family AT5G15920 68.9 0.0e+00 1359.4
Cmetu07g2223 . 10 1014 Structural Maintenance of Chromosomes family AT5G07660 63.5 0.0e+00 1198.7
Cmetu07g2223 . 10 1014 Structural Maintenance of Chromosomes family AT5G61460 66.5 0.0e+00 1268.8