Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g0029 ATGGAAATTTCTTCCACCACTCCTAAAACCGTCGAAGAAATTTTCAAAGATTACACTGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTCGATGAATTCTACGGCCTTTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCTAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCCCTTGGAATTAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTACATAGTGATTCCTGGTTACTGTCTGTGGCTTTCTATTTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCTCTAAGAGATCCAACGATGGGCAGGTGAAAAGCAACCCAAAACTTGCCGAACAGAGTTACGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGTGGTTGCTGTGGTGAAAATTACAGTGCAGATGAGTTCTGGATCGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAAGGCAGACAGTAG 723 44.81 MEISSTTPKTVEEIFKDYTARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYFGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSSKRSNDGQVKSNPKLAEQSYEEDVDEHSETLCGCCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22903165 22906330 + PI0016124.1 Cmetu08g0029 362840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g0029 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Cmetu08g0029 240 FunFam PHD finger alfin-like protein 179 235 - -
Cmetu08g0029 240 MobiDBLite consensus disorder prediction 141 175 - -
Cmetu08g0029 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Cmetu08g0029 240 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Cmetu08g0029 240 CDD PHD_AL_plant 186 236 IPR044104 -
Cmetu08g0029 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Cmetu08g0029 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Cmetu08g0029 240 SMART PHD_3 186 234 IPR001965 -
Cmetu08g0029 240 Pfam PHD-finger 187 235 IPR019787 -
Cmetu08g0029 240 PANTHER CPG BINDING PROTEIN 7 240 IPR045104 GO:0006355|GO:0042393
Cmetu08g0029 240 MobiDBLite consensus disorder prediction 146 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g0029 K26274 - - csv:101211970 457.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2478 Cmetu-Chr1:28616521 Cmetu08g0029 Cmetu-Chr8:22903165 4.00E-85 transposed
Cmetu03g1113 Cmetu-Chr3:5955000 Cmetu08g0029 Cmetu-Chr8:22903165 1.60E-86 transposed
Cmetu04g2633 Cmetu-Chr4:3977118 Cmetu08g0029 Cmetu-Chr8:22903165 8.80E-21 transposed
Cmetu06g1618 Cmetu-Chr6:23100182 Cmetu08g0029 Cmetu-Chr8:22903165 4.40E-79 transposed
Cmetu10g1328 Cmetu-Chr10:14679758 Cmetu08g0029 Cmetu-Chr8:22903165 9.50E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1618 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 2.1e-113 405.6
Cmetu03g1113 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.3e-96 349.0
Cmetu01g2478 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 1.2e-92 336.7
Cmetu08g0029 . 3 237 Alfin-like Transcription Factor Family AT1G14510 59.2 2.1e-78 289.3
Cmetu10g1328 . 8 240 Alfin-like Transcription Factor Family AT1G14510 57.3 2.3e-72 269.2
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.6e-108 388.7
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT5G26210 63.7 1.4e-96 349.7
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 8.2e-94 340.5
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT5G26210 61.9 1.5e-79 293.1
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.1 2.0e-79 292.7
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 5.2e-101 364.4
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 8.6e-96 347.1
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.4e-90 328.9
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.3 9.5e-79 290.4
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT3G42790 63.1 3.6e-78 288.5
Cmetu08g0029 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.1 2.1e-107 385.6
Cmetu10g1328 . 1 242 Alfin-like Transcription Factor Family AT5G05610 70.2 4.2e-100 361.3
Cmetu03g1113 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 2.1e-91 332.4
Cmetu01g2478 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 1.8e-90 329.3
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.2e-83 306.6
Cmetu08g0029 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.2 9.5e-89 323.6
Cmetu10g1328 . 43 242 Alfin-like Transcription Factor Family AT3G11200 70.8 7.3e-81 297.4
Cmetu03g1113 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 2.1e-75 279.3
Cmetu01g2478 . 44 250 Alfin-like Transcription Factor Family AT3G11200 66.2 3.5e-75 278.5
Cmetu06g1618 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.9e-69 258.8
Cmetu06g1618 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.6e-76 283.1
Cmetu03g1113 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.7e-65 245.0
Cmetu01g2478 . 10 160 Alfin-like Transcription Factor Family AT2G02470 76.8 5.7e-63 238.0
Cmetu08g0029 . 3 135 Alfin-like Transcription Factor Family AT2G02470 72.6 6.4e-54 208.0
Cmetu10g1328 . 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 9.2e-53 204.1
Cmetu03g1113 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 7.0e-74 273.9
Cmetu01g2478 . 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 5.2e-69 257.7
Cmetu06g1618 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 8.3e-67 250.4
Cmetu08g0029 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 4.4e-52 201.4
Cmetu10g1328 . 7 136 Alfin-like Transcription Factor Family AT5G20510 68.9 1.3e-51 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8331 PF12165 Alfin 2.40E-67 No_clan Cmetu TF