Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g0046 ATGGAGCGCAAGAAGACGATGAATTGGGATGGACTTCGAGATGACGACGATGACGACCGATTTTTCGAGTCCATTGAGAGAATGTCATGCGCCATGCCGGAGGATTTGGCTTCCTCTTCCGACGAGGACGATTTCGAAGACAGTCGAATGTCCTTCGCCTCCGTTGTCTCCTCCGCCAAACACGACGAGTTCAGAACCTTTGCAATGACTTCGCCGATGACACCGGAATACGACATTTGGATGGCGGCACCAGGATCCATTAAGGAACGTCGCAAGCGATTGCTCGAAGGAATGGGCCTCAATAGCGGCAAACAATTTCAGAGGCTTCAGAGCAGGGAATTTCAGCGGGAGGTTTCGAGGAAATTACTCGAGAATGCTCAAATTTCTCAACCAGAAACCGTTGGATCTCCGGAAGTTGTAGATCAGAAACAAGATGCATCATCTCAAACGCCATTGCCGATTGTGCTCGTTCGTTCACGATCTGATGGAGATATTGATACGTTCTCGATTACCAGGACACGGAAAGATGATCTAATCGGAAACGTTTCGAAACAGCGTCTTACAAGAACTTACTCGATGATAATGGCGTCCAGTGCTCGGATGTGTAACTATCCTGATTCGATTAGAGTTTCGCCTAACGAATGTAGCCAATCGATCAGGCACGGTTCGACATTGTCGACGGTGTTCTCGAACAACAGGTTAGGCGCGTTTTTTCTAATTAAGAATCTGGATACAGGAAATGAATTCATCGTGAATGGATACGATCAAGACGGAATGTGGAATCGACTTAGCGATATTCAAACAGGGAAACAACTTACAATGGAGGAATTCGAGAAATGCGTTGGATATTCACCGGTAGTGAAGGAATTAATGCGAAGAGAGAACGTGTCAAGAATTAACGGATTCTTCGGCGATAGGAAACTCAACGTGAATTCATATCTATCGAAGAGTTTACGAATGAGTAAAAGAAGAGGAGCAGCTCTGTTGAAGAACATCAAAGGCTCAATGACAGGTTTAATCGGGGAAAAAGACAGGGAAATTCCTCAAACCCTAGAAACAAAACCTAGCAAGAACGCGTCGTCATCCTGTCCTTCTCCGCCGCATTCATCATCATCAACAACAGCGGCGCCGACGTCGTCAGAGTGGGTAAAAGTGAGACAGAGCGGAAAATCATACAAAGAACTCTCGGCGCTACATTTCTGTCAGGAAATTCAGGCGCATGAGGGATCAATTTGGACAATGAAATTCAGTTCTGATGCTAGATTATTAGCAAGTGCAGGTGAGGATCGAGTAATACATATATGGGAAGTGCAAGAATGTGAAGTAATGTCAATGAAACCAAATGAAGAAGGAAGTATGACGCCGCTTCATCCTTCGATTTGTCCTTCACCTGATAGACCCGCCATTGGAGATGCTTCAGCTTTGCCATCGGAAAAGAGGAAGAGAGGGAAAGGGATTTCTGGAAGTAGGAAAGGGAATGTGATTCCTGATTATGTTCATGTTCCAGAATCTGTGTTCTCACTTTCTGAAAAACCAATCTGCACTTTGAATGGACATCTTGATGATGTTCTTGATCTCTCTTGGTCTTCTGATTCTCAGCTGCTGCTTTCATCATCAACGGACAAAACTGTAAGGCTATGGGATATGGAAACCAAAAGCTGTTTAAAGATGTTTGCTCACAACGACTATGTGACATGCGTACAATTCAACCCAGTGGATGATGATTATTTCATAAGTGGAGCATTAGATGCAAAGGTGAGGATATGGAACATTCCAGATAGATATGTGGTCGATTGGACTGACCTTCATGAAATGGTCACTGCCGCTTCCTATACACCCGATGGCCAGGGTGCCGTTATAGGTTGTCATAAAGGGACTTGCCGAATGTACAGCATAGAGGATTCCAAGTTAGAACAGAAGCACCAGGTTGATGTGCAGAGCAAAAAGAAGAATCATGGAAAAAAGATCACTGGTTTACAATTTGTTCCTGGGAGCCCTACTGAAGTGCTGGTTACTTCTGCTGATTCTCGAATTCGAATCTTGGAAGGCACCGAAATTACTCATAGATTCAGAGGTTTCCGAAACACCAGCAGCCAAATTACAGCTTCGTTCAGTCAAGATGGGAAATATGTGATATGTGCAAGTGAAGATTCTCAAGTTTTTGTATGGAAGAGAGAGGAGCCACGAAATCCAAGTTCTGGAAAGAAAGGTTTGATGGCAATCAGAGGTCACGAACACTTCCCATGTAAAGATGTTTCTGTAGCAATCCCCTGGCCTGGAATGATAAGCGGTGAACCGCCATTGGTGCAAATGAATTCAAAACGACATTCGAAACGTGGCTCGTCACAGCCAGCTTCAGCCGGCAGCTCACCAACTCGAGACGAAAACAACTCAACTGCAAACAATAAGAAGCAGTTGCCACCTCTACCAAAGAAAAATAACAATGCTGTGGAGAATAATAACAATAACAACAATAATAATGGTGGTAGTACCTCAACAACTCCTCCAGACGAAGAACAGCAGCAGCAAGCTCAAGTTACTCGCTCAGAATCCAGAACTGGTGAATCACTCAGTTCATCACCTTCAGCTTCTATCAGGCATGGTGATTCACCTTCTTTGTCTTCTTCTGCTGCTATCAACAACAACCCAACATCTTCCTCCTGGTCTTCCTCTTGGTCCTGGTTTGATGTCGGAAACAGCCATGGCCACCATGCCATCCCAGCTACGGCATGGGGATTGGTCATCGTGACTGCGGGACTGGGAGGTGAAATAAGGGCCTATCAAAATTTTGGACTGCCACGTAGGATTGGACGACAGACTAATTTCTGGCCAACTACATAG 2841 44.91 MERKKTMNWDGLRDDDDDDRFFESIERMSCAMPEDLASSSDEDDFEDSRMSFASVVSSAKHDEFRTFAMTSPMTPEYDIWMAAPGSIKERRKRLLEGMGLNSGKQFQRLQSREFQREVSRKLLENAQISQPETVGSPEVVDQKQDASSQTPLPIVLVRSRSDGDIDTFSITRTRKDDLIGNVSKQRLTRTYSMIMASSARMCNYPDSIRVSPNECSQSIRHGSTLSTVFSNNRLGAFFLIKNLDTGNEFIVNGYDQDGMWNRLSDIQTGKQLTMEEFEKCVGYSPVVKELMRRENVSRINGFFGDRKLNVNSYLSKSLRMSKRRGAALLKNIKGSMTGLIGEKDREIPQTLETKPSKNASSSCPSPPHSSSSTTAAPTSSEWVKVRQSGKSYKELSALHFCQEIQAHEGSIWTMKFSSDARLLASAGEDRVIHIWEVQECEVMSMKPNEEGSMTPLHPSICPSPDRPAIGDASALPSEKRKRGKGISGSRKGNVIPDYVHVPESVFSLSEKPICTLNGHLDDVLDLSWSSDSQLLLSSSTDKTVRLWDMETKSCLKMFAHNDYVTCVQFNPVDDDYFISGALDAKVRIWNIPDRYVVDWTDLHEMVTAASYTPDGQGAVIGCHKGTCRMYSIEDSKLEQKHQVDVQSKKKNHGKKITGLQFVPGSPTEVLVTSADSRIRILEGTEITHRFRGFRNTSSQITASFSQDGKYVICASEDSQVFVWKREEPRNPSSGKKGLMAIRGHEHFPCKDVSVAIPWPGMISGEPPLVQMNSKRHSKRGSSQPASAGSSPTRDENNSTANNKKQLPPLPKKNNNAVENNNNNNNNNGGSTSTTPPDEEQQQQAQVTRSESRTGESLSSSPSASIRHGDSPSLSSSAAINNNPTSSSWSSSWSWFDVGNSHGHHAIPATAWGLVIVTAGLGGEIRAYQNFGLPRRIGRQTNFWPTT 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16125711 16130780 + PI0028555.1 Cmetu08g0046 362857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g0046 946 MobiDBLite consensus disorder prediction 126 145 - -
Cmetu08g0046 946 PRINTS G protein beta WD-40 repeat signature 577 591 IPR020472 -
Cmetu08g0046 946 PRINTS G protein beta WD-40 repeat signature 535 549 IPR020472 -
Cmetu08g0046 946 PRINTS G protein beta WD-40 repeat signature 423 437 IPR020472 -
Cmetu08g0046 946 MobiDBLite consensus disorder prediction 463 489 - -
Cmetu08g0046 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 557 591 - -
Cmetu08g0046 946 Gene3D - 339 557 IPR015943 GO:0005515
Cmetu08g0046 946 Gene3D - 558 747 IPR015943 GO:0005515
Cmetu08g0046 946 Pfam WD domain, G-beta repeat 689 724 IPR001680 GO:0005515
Cmetu08g0046 946 Pfam WD domain, G-beta repeat 511 548 IPR001680 GO:0005515
Cmetu08g0046 946 Pfam WD domain, G-beta repeat 553 590 IPR001680 GO:0005515
Cmetu08g0046 946 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Cmetu08g0046 946 ProSitePatterns Trp-Asp (WD) repeats signature. 535 549 IPR019775 -
Cmetu08g0046 946 MobiDBLite consensus disorder prediction 774 883 - -
Cmetu08g0046 946 ProSitePatterns Trp-Asp (WD) repeats signature. 423 437 IPR019775 -
Cmetu08g0046 946 MobiDBLite consensus disorder prediction 341 382 - -
Cmetu08g0046 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 516 557 IPR001680 GO:0005515
Cmetu08g0046 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 404 438 - -
Cmetu08g0046 946 PANTHER WD REPEAT DOMAIN 44 15 933 IPR040324 -
Cmetu08g0046 946 SUPERFAMILY WD40 repeat-like 399 728 IPR036322 GO:0005515
Cmetu08g0046 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 445 IPR001680 GO:0005515
Cmetu08g0046 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 591 IPR001680 GO:0005515
Cmetu08g0046 946 MobiDBLite consensus disorder prediction 352 382 - -
Cmetu08g0046 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 516 551 - -
Cmetu08g0046 946 SMART WD40_4 592 631 IPR001680 GO:0005515
Cmetu08g0046 946 SMART WD40_4 642 682 IPR001680 GO:0005515
Cmetu08g0046 946 SMART WD40_4 397 436 IPR001680 GO:0005515
Cmetu08g0046 946 SMART WD40_4 551 590 IPR001680 GO:0005515
Cmetu08g0046 946 SMART WD40_4 683 724 IPR001680 GO:0005515
Cmetu08g0046 946 SMART WD40_4 509 548 IPR001680 GO:0005515
Cmetu08g0046 946 MobiDBLite consensus disorder prediction 765 883 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g0046 K20241 - - csv:101206616 1694.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0039 Cmetu-Chr7:22145381 Cmetu08g0046 Cmetu-Chr8:16125711 1.70E-146 dispersed
Cmetu08g0046 Cmetu-Chr8:16125711 Cmetu09g1184 Cmetu-Chr9:1250598 6.30E-91 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009141 2 0 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33