Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g0078 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGTGAGCAGAGTCCAAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAGGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACTAGCGAGGCAAGTGATAAATGCCAAAGAGAGAAACGGAAGACGATTAATGGTGATGATTTACTTTGGGCCATGGCCACTCTTGGATTCGAGGATTATATTGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACTGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGGGTCAGCTAAGAAAGAAGCTCATCCAACCCCTATTCCTCAGATGGCTCATCAAGGGTCGTTTTCCCAAGGAGTTACTTATGCAAGTTCCCAATCACAAGCCCAGCATATGATGGTCCCTATGCAAGGTAGACCCTTTGAAAGTCCATCGGGGAATGTCAAATGA 549 45.54 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVTYASSQSQAQHMMVPMQGRPFESPSGNVK 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21871879 21876174 - PI0008529.2 Cmetu08g0078 362889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g0078 182 Gene3D Histone, subunit A 17 163 IPR009072 GO:0046982
Cmetu08g0078 182 MobiDBLite consensus disorder prediction 117 182 - -
Cmetu08g0078 182 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Cmetu08g0078 182 MobiDBLite consensus disorder prediction 143 166 - -
Cmetu08g0078 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cmetu08g0078 182 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cmetu08g0078 182 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cmetu08g0078 182 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cmetu08g0078 182 SUPERFAMILY Histone-fold 27 134 IPR009072 GO:0046982
Cmetu08g0078 182 MobiDBLite consensus disorder prediction 1 28 - -
Cmetu08g0078 182 MobiDBLite consensus disorder prediction 117 132 - -
Cmetu08g0078 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmetu08g0078 182 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g0078 K08065 - - csv:101212699 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2588 Cmetu-Chr1:24681432 Cmetu08g0078 Cmetu-Chr8:21871879 1.70E-36 transposed
Cmetu06g1146 Cmetu-Chr6:27007172 Cmetu08g0078 Cmetu-Chr8:21871879 2.60E-34 transposed
Cmetu06g2349 Cmetu-Chr6:27139757 Cmetu08g0078 Cmetu-Chr8:21871879 1.70E-43 transposed
Cmetu07g1457 Cmetu-Chr7:4048243 Cmetu08g0078 Cmetu-Chr8:21871879 1.50E-43 transposed
Cmetu11g2212 Cmetu-Chr11:18828279 Cmetu08g0078 Cmetu-Chr8:21871879 3.50E-33 transposed
Cmetu10g1537 Cmetu-Chr10:16612019 Cmetu08g0078 Cmetu-Chr8:21871879 5.20E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1146 . 42 147 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.1 1.8e-47 186.4
Cmetu06g2349 . 6 152 CCAAT-HAP3 Transcription Factor Family AT5G47670 50.3 1.7e-37 153.3
Cmetu06g1146 . 44 169 CCAAT-HAP3 Transcription Factor Family AT1G21970 72.9 7.5e-49 191.0
Cmetu07g1457 . 9 136 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.0 2.3e-37 152.9
Cmetu06g2349 . 1 152 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.0 1.3e-49 193.0
Cmetu07g1457 . 27 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.2e-47 184.1
Cmetu11g2212 . 1 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.4 4.0e-46 181.4
Cmetu08g0078 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 4.5e-45 177.9
Cmetu10g1537 . 11 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.3 3.2e-43 171.8
Cmetu01g2588 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.0e-37 152.5
Cmetu10g1537 . 1 118 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.7 3.7e-49 191.4
Cmetu08g0078 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.1e-48 188.3
Cmetu06g2349 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 9.8e-42 166.8
Cmetu07g1457 . 14 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.8e-41 165.2
Cmetu01g2588 . 34 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.3e-38 156.4
Cmetu01g2588 . 44 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cmetu06g2349 . 19 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.2 1.2e-39 159.8
Cmetu07g1457 . 30 138 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.2e-38 154.5
Cmetu08g0078 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.7 1.9e-62 235.7
Cmetu10g1537 . 7 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.9 5.6e-54 207.6
Cmetu07g1457 . 29 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.2e-41 164.9
Cmetu06g2349 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 7.2e-41 164.1
Cmetu01g2588 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.2e-37 150.6
Cmetu07g1457 . 17 131 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.3e-44 176.0
Cmetu08g0078 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 6.6e-44 174.5
Cmetu06g2349 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.3e-41 166.0
Cmetu01g2588 . 22 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.0 2.6e-40 162.5
Cmetu10g1537 . 28 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 4.9e-39 158.3
Cmetu06g2349 . 1 126 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.7 4.2e-50 194.9
Cmetu07g1457 . 25 130 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 9.0e-45 177.2
Cmetu08g0078 . 11 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.8e-44 174.5
Cmetu10g1537 . 14 138 CCAAT-HAP3 Transcription Factor Family AT5G47640 65.6 7.6e-44 174.1
Cmetu11g2212 . 1 112 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.0 2.1e-41 166.0
Cmetu01g2588 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.3e-38 156.8
Cmetu08g0078 . 12 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 8.3e-61 230.3
Cmetu10g1537 . 12 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.6 9.8e-54 206.8
Cmetu06g2349 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.5e-41 166.4
Cmetu07g1457 . 18 122 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.3e-41 164.1
Cmetu01g2588 . 19 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.2 1.3e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8335 PF00808 CBFD_NFYB_HMF 8.70E-28 CL0012 Cmetu TF