Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g0165 ATGGAGCTAAGAATGTGGGATCAGGCTAAGAAGCATGTTGAGAAGGATATTATAATCTGTAAGAATATTGGGCATTGCCAAGGAGAGGCTAAAGGATACATTAACCTTGGTGAACTGCATTACAGGGTTCAAAAGTATGATGAAGCAATTCATTGCTATCGGAAGGCTCTTCATCTAGCAAAATCAATGGAAGATGAGGATGCTTTGGCAAGGCAAATTGATCAGAATATCAATACTGTTAAAGAAGCTATGAAAGTGATGGTTGAACTAAGAAAAGAAGAGCAAAATCTTAAGAAGCTAATGAGAGAAATGGTCACTGCTAGAGGCACACCACGTGAGCGCAAATGTCTACTACAGCAAAATGCTTCTCTCGATCGCTTAATTGAAAAATCAAGTACGATTTTTGCATGGATGCAGCATCTTGAATTTGCAAAAAGGAAGAAAAGAGTAGCAAGTGAACTTTGCGACAAGGAAAAGCTGAGTGATTCTTATCTGGCTATTGGGGAATCATATCAAAAACTAAGAAAATTCACAAAATCCATTAAATGGTATGTGAAGAGCTGGGAAGTATACAAGTCTATTGGTAATTTAGAGGGACAAGCACTAGCCAAGATTAATATTGGTGACGTTTACGACTGTGATGGTAAGTGGACAGAAGCACTAGATGCATTTGAGGAGAGTTACAGGATTGCTGTTGAGGCTAAACTTCCTTCTGTTCAGCTTTCAGCACTGGAGAATATGCATTATAGCCACATGATACGATTTGATAATGCAGAAGAAGCTAGGCGGTTACAGTCTCAAATTGACCAATTGAAGGAGAAAACTAAAAGTGGTAATGATACAAGGGCAGAGGATTGTTGCTCTGAAACTGATACAGAAGCGAACGATGCTCTATCAGACAGTTCATCTGATGAGTGCTCCTTGTCAGAAACTAGAAAAGCTTGTAAAAGCAAATTTAATTCTTCAAAATCTTTAGCTGATTTAGAAGAGCCAGACGCAGTTACTTTTAATTCATCCTTCAAGCGGCATGAAAGGTCACCTACAATCAAATCATTTGACATGGAAAAATCCAATGCTTCTTCTAACCCATCTGAATTTTCACCTAAAAGTTTGTCTAAGTCAGCTGGTAACCAACAGACAACCGTTGGTCGTAAACGCATTCGTGTGGTTCTTTCTGATGATGATGAAGACGAGGATGAAATGATGGATTTCTCAAAATCAAGGCCTCATTTATGCCGGGGAGAGAATTCTGCAACTTCTGATGACAACAAGAATAAACAATACTCAGGAAATCTTGCAGCTGAAGTTAAGGAGGGTTCAACAACAACCAGCAAACATGCAAGCAGGTCTTGCGAAGATATTGAAGAAAGCACTGGTTCATATAAATATAAGAGTCGAATCATCGCAACTCAAAATAACAAAACTTTTGGAACCCCAAATGCTGATGAAATATTTCCTTCTGATTCTGCTGCTAGTGGCTCAAAATTTGAAGTTGACATCTCTGAAAATCTGTTGCATAGATATAAGGCTACCAAGTCAAAGCCTTCTGAGCAGGGTGAATGTGTTACATTCAAAATTGATAATGAGCTGATACACGTAGATGTTGCCTTATTTAGCAATATGCTAAGCATTGAATCTGCAAAGGAAGAACTAGCATGCATGTACTATCTACAACTTCCCCTTGAAAAGAGATCAGAGGGTCTGTTACCTGTGATTCAACATATAAGTCATGATGGGAGAACGCTGGAGACCCTTGAATTTTCAAAAACCTTTGACCATGGGAGAAATCTTTTGTTTGAAGCTGTCGTCAATGGATGGGTTTCAAAACCCTTGATAAAACTCTATATTGACTACTGCAAGGAGTTATCTGAGACACCTAACATGAAGCTGGTGAAGAAACTGTACAATCTGGAGGCTTCAGATGACGAGATTGCAGTCTCTGATTGTGATCTGCAAGACTTATCTATAAGTCCATTGTTGAATGCGCTGCACACCCAGAAAACTTTTGCCATTTTAGACCTTTCTCACAATTTCTTAGGAAATGGAACGATGGAGAAAATTCAGCAGGTTTTCAAGCAGTCCAGCCAGACACATGACTTGACATTAGATTTACACTGCAATCGATTTGGTCCAACTGCTTTATACCAGATTTGTGAATGCCCTTTTCTGTTCGCTCGTTTGGAAGTGCTTAACATATCTGGAAATCGCCTTACTGATGCTTGCGGGTCATACCTGTCAACTATCTTAAAAAATTGCAAAGGTCTTTGGTGCTTGAATATTGAACGATGTTCCATCACATCTAGAACAATTCAAAAGGTTGCTGATGCACTGGAAGTTGGAGCATCACTGGAAAAGCTCTATATAGGATACAACAACTCAATCTCAGGAAATGCCCTCAGTAGTTTATTTGTTAAGCTCGCTGTACTGAATAGGTTCAATAGTCTTGGTCTATCTGGTTTGAAGTTGAGCAAGCCTGTTATGGAAGGCCTTCTCCAACTTGTTAAATCCTTGGGTTTGTCTGGATTAATGCTTGGGGGCACTGGCATTGGAGATGATGCTGCATTAGGGATAACTGAATCATTTAGTGGAAGTGAAGAGCTTGTGAAATTTGACTTGGCTTATTGTGGACTGACATCCAAGTACCTTGTCAAATTTGGTGGTTGCATTTCTATTATACAGCGCGTTCATGAGCTGAACCTTTCTGGGAATGCCATCATGCAAGAGGGTTGTCATGCAGTATCGTCACTAATTGCTAACCCTCAATGCGGCATCAAAGTCTTGCTTCTCAACAAGTGTCAACTTGGCCTAACTGGAGTTGCTGAAATCATTCAAGCTATAGCAGGTAACCACTGTCTTGAAGAGCTCAATCTTGCTGATAACATTGATCTTGATAAACATCCCCTGCAATGTAACATAATAGAGAAAGAAAATAAAGAACTTATACAACCGTGTCATGATATATCTAAGCCTCATGGCCTAACATGTTCAAGCAAGGAGTTAGACCCCGCTCAACAGAATTTAGAGGAGATAAACACTGAATACAATCAGCTTGAAGTTGCTGATAGTGAAGAACCAATTAGAGAAGCTCCAGCATCCGGGATCGATGATAGTTGTGCAAGTTCATGTGAAAGAAAATCCACATCTCTTGATTGCCAGTTTATTTTATCACTTTCAACTTCAATTGGGATGGCAAAGACATTGCAATTACTGGATCTTAGCAATAATGGTTTTTCTTCCCAAGAGACTGAAACAATATTTGGTGCATGGTCAACTTCAAGAACTGATTTGGCCCAAAGACATATTAAGGACAACATAGTACATCTATACGTAAAGGGTACGAAGTGTTGTGTGAGACCCTGCTGCAAGAAGGATTAA 3375 39.47 MELRMWDQAKKHVEKDIIICKNIGHCQGEAKGYINLGELHYRVQKYDEAIHCYRKALHLAKSMEDEDALARQIDQNINTVKEAMKVMVELRKEEQNLKKLMREMVTARGTPRERKCLLQQNASLDRLIEKSSTIFAWMQHLEFAKRKKRVASELCDKEKLSDSYLAIGESYQKLRKFTKSIKWYVKSWEVYKSIGNLEGQALAKINIGDVYDCDGKWTEALDAFEESYRIAVEAKLPSVQLSALENMHYSHMIRFDNAEEARRLQSQIDQLKEKTKSGNDTRAEDCCSETDTEANDALSDSSSDECSLSETRKACKSKFNSSKSLADLEEPDAVTFNSSFKRHERSPTIKSFDMEKSNASSNPSEFSPKSLSKSAGNQQTTVGRKRIRVVLSDDDEDEDEMMDFSKSRPHLCRGENSATSDDNKNKQYSGNLAAEVKEGSTTTSKHASRSCEDIEESTGSYKYKSRIIATQNNKTFGTPNADEIFPSDSAASGSKFEVDISENLLHRYKATKSKPSEQGECVTFKIDNELIHVDVALFSNMLSIESAKEELACMYYLQLPLEKRSEGLLPVIQHISHDGRTLETLEFSKTFDHGRNLLFEAVVNGWVSKPLIKLYIDYCKELSETPNMKLVKKLYNLEASDDEIAVSDCDLQDLSISPLLNALHTQKTFAILDLSHNFLGNGTMEKIQQVFKQSSQTHDLTLDLHCNRFGPTALYQICECPFLFARLEVLNISGNRLTDACGSYLSTILKNCKGLWCLNIERCSITSRTIQKVADALEVGASLEKLYIGYNNSISGNALSSLFVKLAVLNRFNSLGLSGLKLSKPVMEGLLQLVKSLGLSGLMLGGTGIGDDAALGITESFSGSEELVKFDLAYCGLTSKYLVKFGGCISIIQRVHELNLSGNAIMQEGCHAVSSLIANPQCGIKVLLLNKCQLGLTGVAEIIQAIAGNHCLEELNLADNIDLDKHPLQCNIIEKENKELIQPCHDISKPHGLTCSSKELDPAQQNLEEINTEYNQLEVADSEEPIREAPASGIDDSCASSCERKSTSLDCQFILSLSTSIGMAKTLQLLDLSNNGFSSQETETIFGAWSTSRTDLAQRHIKDNIVHLYVKGTKCCVRPCCKKD 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18524408 18538327 - PI0015494.1 Cmetu08g0165 362976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g0165 1124 MobiDBLite consensus disorder prediction 402 420 - -
Cmetu08g0165 1124 Coils Coil 1122 1124 - -
Cmetu08g0165 1124 PANTHER PROTEIN TONSOKU 1 1124 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Cmetu08g0165 1124 Pfam Tetratricopeptide repeat 163 231 - -
Cmetu08g0165 1124 Gene3D Ribonuclease Inhibitor 617 1115 IPR032675 -
Cmetu08g0165 1124 Gene3D Tetratricopeptide repeat domain 1 287 IPR011990 GO:0005515
Cmetu08g0165 1124 Coils Coil 254 281 - -
Cmetu08g0165 1124 Coils Coil 80 110 - -
Cmetu08g0165 1124 ProSiteProfiles TPR repeat region circular profile. 30 59 - -
Cmetu08g0165 1124 Coils Coil 1000 1020 - -
Cmetu08g0165 1124 MobiDBLite consensus disorder prediction 352 385 - -
Cmetu08g0165 1124 MobiDBLite consensus disorder prediction 421 447 - -
Cmetu08g0165 1124 FunFam Protein TONSOKU 618 987 - -
Cmetu08g0165 1124 SMART LRR_RI_2 666 693 - -
Cmetu08g0165 1124 SMART LRR_RI_2 921 948 - -
Cmetu08g0165 1124 SMART LRR_RI_2 892 919 - -
Cmetu08g0165 1124 SMART LRR_RI_2 724 751 - -
Cmetu08g0165 1124 SUPERFAMILY HCP-like 26 230 - -
Cmetu08g0165 1124 MobiDBLite consensus disorder prediction 271 289 - -
Cmetu08g0165 1124 MobiDBLite consensus disorder prediction 271 304 - -
Cmetu08g0165 1124 SUPERFAMILY RNI-like 645 1077 - -
Cmetu08g0165 1124 ProSiteProfiles TPR repeat profile. 30 63 IPR019734 GO:0005515
Cmetu08g0165 1124 SMART tpr_5 161 194 IPR019734 GO:0005515
Cmetu08g0165 1124 SMART tpr_5 30 63 IPR019734 GO:0005515
Cmetu08g0165 1124 SMART tpr_5 201 234 IPR019734 GO:0005515
Cmetu08g0165 1124 Pfam Tetratricopeptide repeat 30 60 IPR001440 GO:0005515
Cmetu08g0165 1124 MobiDBLite consensus disorder prediction 338 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g0165 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1265 Blo04g00969 . . . Bpe15g00397 . . . . . Cma03g01081 . Car03g00971 . Sed10g0490 . Cpe10g00348 Bhi03g01379 Tan03g1329 Cmetu08g0165 . Hepe04g1126 . . Cla01g01530 Cam01g1598 Cec04g1243 Cco04g1312 Clacu01g1623 Cmu01g1509 Cre04g1188 . . . . Lsi01g01135 . . Cme08g01069 . . . Bda14g01059 . . Bma03g01034 . . Cmo03g01070 . . . . . . . . . . . . . . . . . . . . . . Csa06g02797 Chy02g01038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 31