Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g0213 ATGGCGAATATGTGTGCCGATAGTGGCAATCTAATGGCGATTGCTCAGCAAGTCATGAAGCAGAAGCAGCAACAGGAGCAGCAGCAGCAGCACCCACAGCACCAGCCACAGCAGCTTACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGCGCCTCGAGCCATGCTTTGTCTGGGGCTCCAGATTTGGGGTTTGGTCTCACCGGAGCTGGATTTCCTGATCCATTTCAGGTTCAGAGAGTGGTCGATGGTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGCACCATTCTCCTGCTTTTAGATTTTCTGATTTCGACGGCGGTGCTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGCTGGTGGAGATTCAACGGATAGCTCTAATCTTCCTTCTGGATGCGACGCGTGGCAATCTAATTCGGATTTTGCTTTCTACGCTGCCGATCCCTTTGTACCCTGTCCAAGTCGCCTCACTATCCCCTGTTCTTCACCCTCTGATCTTAACAGAGTCATTTTCCCTGACCCGCCCAAAAGTGAACCCGCCGTTGAACCGCCGGTGGTTTCGTGGACGGGGATTCCCCCGGCAACTCCATCGGCAGTGGTTAAGGACACTCAAATCCCCAACCCTCCCCTTGCTGTTCTCAAGAGTGAAGATAATGGCGGTTCGTCGAGCTCTGCAGAGACTGAATCGACTCCGCCACTACTTAAAACCCTAATTGAATGTGCTCGAATTTCCGAATCGGAGCCAGATCGAGCGGCTCAAACGTTGATTAAGCTTAAGGAATCGTCATCAGAGCATGGAGATCCGACGGAGAGGGTGGCCTTTTACTTTATGGAAGCCCTTTGCCGGAGATTATCACTTCGATCGGATAGTCGTTTGATTTCTTGTGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTCAACGACGCTTGCCCTTACTCCAAATTCGCTCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGAAAACGCAAGCAAGATTCACATAATCGACTTCGGTATTGCTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCGGAATCCGGATCTCCGGCATTCCAGCTCCAATGCTTGGAAACTGTCCAGCGACGGGGTTGTTCGCGACAGGTAACCGACTAGCCGAGTTCGCAAAGCTTCTGGAACTTAACTTCGAATTCGATCCAATTCTCACTCCAATCGAAGAACTGAACGAATCATCCTTCCGAATGGACACCGATGAAACCCTGGCCGTGAATTTCATGCTTCAATTGTACAACCTCCTAGACGAAACTCCCCACGCCGTCCTCAACGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCAAGCCTAAACCGGGTCGGTTTCTTCAACCGGTTCAAGAACGCACTCAGATACTACTCAGCCGTGTTCGAATCACTTGACCCAAAACTACCTCGCGACTCAAACGAGCGGCTCCACCTGGAAAAGCTATTGCTCGGCCGGCAAATCGGTGGCCTGGTCGGACCGGAATCATCACCGGGATCGAAAACCGAACGAATGGAAGACAAAGAAGAATGGAAAAGGTTAATGGAAAATTCAGGATTTGAATCAGTAAATCTGAGCCATTACGCAAAAAGCCAAGCTAAAATCCTTTTATGGAAGTACGATTATAGCTCTGAGTATTCATTAATGGAATCCTCACCTGGGTTTCTCTCATTGGCATGGAACGAAGTCCCAATCATTACAGTTTCTTCATGGCGTTGA 1830 49.67 MANMCADSGNLMAIAQQVMKQKQQQEQQQQHPQHQPQQLTGPCTFGLNPWSASSHALSGAPDLGFGLTGAGFPDPFQVQRVVDGGETSFQFPNLEHHSPAFRFSDFDGGAAAEFDSDEWMESLMAGGDSTDSSNLPSGCDAWQSNSDFAFYAADPFVPCPSRLTIPCSSPSDLNRVIFPDPPKSEPAVEPPVVSWTGIPPATPSAVVKDTQIPNPPLAVLKSEDNGGSSSSAETESTPPLLKTLIECARISESEPDRAAQTLIKLKESSSEHGDPTERVAFYFMEALCRRLSLRSDSRLISCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTENASKIHIIDFGIAQGVQWAALLQALATRSTGKPTGIRISGIPAPMLGNCPATGLFATGNRLAEFAKLLELNFEFDPILTPIEELNESSFRMDTDETLAVNFMLQLYNLLDETPHAVLNVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSNERLHLEKLLLGRQIGGLVGPESSPGSKTERMEDKEEWKRLMENSGFESVNLSHYAKSQAKILLWKYDYSSEYSLMESSPGFLSLAWNEVPIITVSSWR 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21612447 21615414 + PI0027004.1 Cmetu08g0213 363024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g0213 609 MobiDBLite consensus disorder prediction 17 45 - -
Cmetu08g0213 609 ProSiteProfiles GRAS family profile. 231 609 IPR005202 -
Cmetu08g0213 609 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 227 602 IPR005202 -
Cmetu08g0213 609 MobiDBLite consensus disorder prediction 223 237 - -
Cmetu08g0213 609 Pfam GRAS domain family 241 609 IPR005202 -
Cmetu08g0213 609 MobiDBLite consensus disorder prediction 217 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g0213 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g0213 Cmetu-Chr8:21612447 Cmetu12g1542 Cmetu-Chr12:23727917 1.60E-39 dispersed
Cmetu07g1100 Cmetu-Chr7:4118685 Cmetu08g0213 Cmetu-Chr8:21612447 9.50E-186 transposed
Cmetu07g1644 Cmetu-Chr7:4244046 Cmetu08g0213 Cmetu-Chr8:21612447 3.50E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g959 . . Bda04g00052 . . Bpe13g00449 . . Cmo04g00840 Cmo16g00713 Cma03g00756 Cma07g00493 Car03g00690 Car07g00433 Sed10g0914 Cpe19g00807 Cpe10g00605 Bhi03g01287 Tan03g1972 Cmetu08g0213 . Hepe04g1503 . . Cla01g01901 Cam01g1990 . . Clacu01g2009 Cmu01g1880 . . . Cone6ag1617 Cone9ag1542 Lsi01g00680 . Chy07g01294 Cme08g00842 Blo05g00794 . Bda11g01872 . . . . Bma06g00126 . Cmo03g00782 Cmo07g00492 Cma16g00656 . . . . Cpe14g00561 . . . . . . . Cla07g00872 Cam07g0944 Cec07g1011 Cco07g0988 Clacu07g0918 Cmu07g0917 Cre07g1288 Lsi07g00202 Csa06g03233 Chy02g00656 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g0553 . 80 758 GRAS Transcription Factor Family AT2G37650 54.3 4.4e-198 688.3
Cmetu12g1542 . 313 695 GRAS Transcription Factor Family AT3G46600 56.4 7.9e-126 448.0
Cmetu08g0772 . 48 467 GRAS Transcription Factor Family AT3G49950 60.3 8.2e-136 480.7
Cmetu06g2197 . 402 771 GRAS Transcription Factor Family AT3G60630 51.5 5.3e-94 342.4
Cmetu07g1514 . 66 444 GRAS Transcription Factor Family AT5G41920 71.1 1.2e-150 530.0
Cmetu08g1297 . 458 834 GRAS Transcription Factor Family AT5G41920 56.6 3.5e-115 412.1
Cmetu08g0213 . 1 609 GRAS Transcription Factor Family AT5G66770 59.7 1.5e-183 639.8
Cmetu07g1100 . 1 591 GRAS Transcription Factor Family AT5G66770 55.1 5.0e-171 598.2
Cmetu11g2092 . 57 545 GRAS Transcription Factor Family AT1G50600 59.2 1.5e-163 573.2
Cmetu06g1047 . 46 544 GRAS Transcription Factor Family AT1G50600 58.4 1.9e-161 566.2
Cmetu04g1140 . 103 541 GRAS Transcription Factor Family AT1G50600 56.1 3.7e-141 498.8
Cmetu04g0683 . 202 593 GRAS Transcription Factor Family AT1G50600 57.9 4.9e-133 471.9
Cmetu09g1879 . 44 567 GRAS Transcription Factor Family AT1G14920 66.1 1.7e-197 686.0
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT1G14920 56.1 4.6e-155 545.0
Cmetu06g2650 . 26 387 GRAS Transcription Factor Family AT1G55580 50.9 7.6e-103 371.3
Cmetu09g1879 . 1 565 GRAS Transcription Factor Family AT1G66350 54.8 3.3e-163 572.0
Cmetu06g1601 . 1 553 GRAS Transcription Factor Family AT1G66350 55.6 7.7e-160 560.8
Cmetu11g2092 . 19 545 GRAS Transcription Factor Family AT5G48150 65.9 1.3e-193 672.9
Cmetu06g1047 . 17 544 GRAS Transcription Factor Family AT5G48150 57.5 6.0e-170 594.3
Cmetu04g1140 . 96 541 GRAS Transcription Factor Family AT5G48150 57.8 2.9e-148 522.3
Cmetu04g0683 . 128 593 GRAS Transcription Factor Family AT5G48150 53.3 3.3e-136 482.3
Cmetu01g2186 . 179 570 GRAS Transcription Factor Family AT5G48150 53.0 2.2e-119 426.4
Cmetu09g1879 . 46 564 GRAS Transcription Factor Family AT2G01570 67.0 3.6e-201 698.4
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT2G01570 58.1 5.7e-159 558.1
Cmetu09g1879 . 1 565 GRAS Transcription Factor Family AT1G66350 54.8 3.3e-163 572.0
Cmetu06g1601 . 1 553 GRAS Transcription Factor Family AT1G66350 55.6 7.7e-160 560.8
Cmetu09g1879 . 46 564 GRAS Transcription Factor Family AT3G03450 58.2 4.4e-161 565.1
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT3G03450 57.3 8.9e-154 540.8
Cmetu09g1879 . 42 564 GRAS Transcription Factor Family AT5G17490 55.0 7.7e-147 517.7
Cmetu06g1601 . 1 554 GRAS Transcription Factor Family AT5G17490 50.4 7.4e-134 474.6
Cmetu01g2186 . 1 570 GRAS Transcription Factor Family AT1G21450 57.5 7.1e-173 604.4
Cmetu06g1047 . 168 544 GRAS Transcription Factor Family AT1G21450 52.4 1.3e-113 407.5
Cmetu04g0683 . 225 593 GRAS Transcription Factor Family AT1G21450 50.8 1.8e-107 387.1
Cmetu12g1542 . 321 695 GRAS Transcription Factor Family AT5G59450 56.2 1.0e-126 451.1
Cmetu08g0553 . 309 758 GRAS Transcription Factor Family AT5G59450 50.3 8.1e-124 441.4
Cmetu04g1140 . 1 541 GRAS Transcription Factor Family AT4G17230 58.1 2.2e-173 605.9
Cmetu11g2092 . 1 545 GRAS Transcription Factor Family AT4G17230 50.6 1.9e-145 513.1
Cmetu06g1047 . 49 544 GRAS Transcription Factor Family AT4G17230 52.1 1.2e-134 477.2
Cmetu04g0683 . 220 593 GRAS Transcription Factor Family AT4G17230 51.9 4.4e-110 395.6
Cmetu11g2092 . 134 545 GRAS Transcription Factor Family AT2G04890 66.1 2.1e-160 562.4
Cmetu06g1047 . 148 544 GRAS Transcription Factor Family AT2G04890 58.9 7.2e-140 494.2
Cmetu04g0683 . 206 593 GRAS Transcription Factor Family AT2G04890 56.0 4.1e-127 451.8
Cmetu04g1140 . 161 541 GRAS Transcription Factor Family AT2G04890 58.0 3.8e-125 445.3
Cmetu10g0531 . 1 462 GRAS Transcription Factor Family AT1G50420 61.3 9.8e-157 550.4
Cmetu02g0988 . 1 435 GRAS Transcription Factor Family AT1G50420 58.0 6.4e-148 521.2
Cmetu06g2197 . 408 771 GRAS Transcription Factor Family AT4G00150 56.0 1.2e-105 380.9
Cmetu07g1100 . 1 591 GRAS Transcription Factor Family AT3G50650 51.3 2.6e-153 539.3
Cmetu08g0213 . 1 609 GRAS Transcription Factor Family AT3G50650 51.1 6.3e-152 534.6
Cmetu08g1297 . 235 832 GRAS Transcription Factor Family AT3G54220 63.9 2.5e-203 705.7
Cmetu07g1514 . 74 442 GRAS Transcription Factor Family AT3G54220 64.2 7.6e-136 481.5
Cmetu08g1528 . 90 490 GRAS Transcription Factor Family AT4G37650 67.3 1.2e-158 557.0
Cmetu11g0520 . 97 491 GRAS Transcription Factor Family AT4G37650 55.2 1.6e-123 440.3
Cmetu11g1296 . 64 455 GRAS Transcription Factor Family AT4G37650 50.6 1.4e-111 400.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002167 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 2 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8348 PF03514 GRAS 7.60E-110 CL0063 Cmetu TF