Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g0424 ATGCGTTATATAAGGAAGTTGATGTTCTTCTATAATGGTTTAATTGTTACTATCTGTAAGATGGGAACTCAAGGTCAAACAGGATTAGTAGCACAAAAGAAGATGCACCCTCCTCAGCCCGGAAGATTTGAAGATCGTGAAGATCTTATTAAATATGTTCGTGATTTTGGTGCTGATCAGGGATATGTTGTAACGATTAAGAAGTCTAGGAAAGATAGAAGAGTCATTCTTGGTTGTGATAGAGGAGGTGTGTACCGTAACAGGCGTAAGATTGATGAGAGTCCACGCAAAAGGAAAGCTAGCTCACGCCTGATAAATTGCCCATTTGAAGCAATTGGAAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGGAACCATAACCATGAGCCCTTAAAAGATATGTCAGAGCATCCTTACAGTCGCCGTTTTACAGAGGATGAAGTAAAGCAAATAAAACTAATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCTCTCAAACAACACAATCCAGATCTGCAGTCAACACCAAGGCATTTGTATAACCTCAAAGCCAAAATTCGCCAAGGAAATCTCTCAGAAAAGAATTTCAAGTCTTGGAGGCCTAATATTTCCGTTCCTACAAATAGTAGGGAATTTTTGGATTCGCACAACTGTCAAGTGTTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCATGTCCCTTTAACAACCTACGAAGAGTTTAAGGCTGCTGTCAATGCAGCCAAACAAGCTTTTCCCTCGTGGAGAAACACACCGATTTATACTCGTCAGTGTGTTATGTTCAAGTTCCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTAATGAATATTGTCGCAGAACAGGGAAAAACATTAAAGGATGCTCAAGATGATATCATCTGTGGTTTAGAGATGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGAGAGTTCATCCCTAGTGCATCTGATGGAATTGATTCTTACTGCATCCGAGAACCAATAGGTGTGTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACAGTTTCCTTATGGATGTTTCCAATTGCTGTTACATGTGGCAATACATTTGTTCTTAAACCGTGTGAAACGCACCCGGGGGCTTCAATGTTGCTAGCTGCATTAGCGATGGAGTCTGGCTTGCCTGATGGTGTTCTGAATATTGTTCATGGATCCCATGATATCATCAACTATATATGTGACGATGAGGACATAAAAGCTGTATCCTTTTCCAGTTCAAGTTCAGTTGGAAAGCACATATATGCTGGGGCTGCTGCTACAGCAAAGAAAGTTCAGTCCCACTTTGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACCTTAAGTGCTCTGGTTGATGCTGGATTGGGTACTGTTGGACGGACATATATGGCTATTGACATCATTGTCTCCGTGGGAAGTTCAACTCTGTGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGAACAGATCCCAATGCTGACCTTGGTCCTGTAACTACCAAAGAGGTGAAAAATCGTTTTTGTAAATTAGTTCAAAGTGGCATTGAAGATGGTGCTAGAGTTTTGCTAGACGGTAGAGATATTGTGGTCTCAGGATATGAAAATGGAAATTTTATTGGTCCAACCATTTTATCAGGTGTAACAACTGACATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTTTATGCAGGCTGACGACCTAGAGGAGGCTATATCCATTGTAAACAGAAACAAAAACCGAAATGGAGCTTCCATATTCACAACTTCTGGCATTTATGCGAGGAAGTTTCAGAGTGAAGTGGAAGTGGGAATGGTTGGTATCAATGTTGCTGTTACAGTTCCGTTGCCATCTTCCTTTAATGATAAGGTAGGGCTGGAGTTTTACACCCAATTGAAAAGAGTGGCTCAACAGTGGAAGAACTCACCAAGTGTTGGAGTCTCAATGGCGGTGCCTTCACCATCTGAGAGACGTTTGAGATCCCGTGCTGCACCTTCCATGTTGGTTTCAACATCTGAGAAAGATTTACCTGGTATGAAGCACAGGAGTTTACCCCCGTTGCCTTCCACATCTGAAAGGGATTCACCCAGCGTCGCTGTACTGCTGCCGAACCCTCGAATAACTCCGACAGGCTTAACTAATGAAAGATCCACCTCCTCTCCGCCGACTCCTGATAGGAATTTGCACGGTCAGGGACTCTCCCTGATTTCTACCTTATCATCGGAGGGGGATGTATCCAACCAAGATTTGTCTCCTGCAATGCTTTCAGCACGTGATAGAGATTTACCTGGTCAAGCTATGTCAATGGCAACATCCAGATCATCTGAGAGACTGTACATACCTCAGAAATCTCATTGGAATGAAACCCCGAGGGCTGATTCAATTCCATCCAGTTCTGAGAGGATCCATGCGACAGGCATCTCGAACAACTCATCCTGCTTTGGTCTTAGCTGCAGAGGGGGGTTATATGTGCCAACATCTCGTGACACTATTTGTCTAATTAACCATGCAAATGATAGTACCGGTCCGTCTCGAAGAATCAACAGCATGTGTCAATCATCAGAACGGGTATACATGCTAGCAACTTCCCATCTGAACGACACTATGGGTCAAACATTGCAGAGAACTGATACCTCCTTGTTTCCTTCTTCAGAGAGGCATTATGCGCCTCCCTCTTCTGATGGAAATGATCACATTAGCTTAGCCTCTCATACCAATGTCGCTTTGCAATCAACCTCAGACAGAATGTTCTTGTCTAGCTTGTCTGAAAGGGACGATAATATGGCTTCCACTGCTTCCCAACAAGGTGAATCTTTAACATCCACTTCAGAGAGAATGTATATACCTCCATTAGTTCATAGAAATGCAGGTATGGCACCGAAATCGGAATGGTTATGCATTCCTACGCCTGCTGGAACTCAGAGAATGTACACACAAGGTCCAATGGTTTCGGCAGATGAATTTCAAAGCCAAGGAGCATCATTGACATTGCCTGCATCGCAAAGAATGTAA 3111 42.94 MRYIRKLMFFYNGLIVTICKMGTQGQTGLVAQKKMHPPQPGRFEDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESPRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGNHNHEPLKDMSEHPYSRRFTEDEVKQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISVPTNSREFLDSHNCQVFDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWRNTPIYTRQCVMFKFQELILRDMDKLVMNIVAEQGKTLKDAQDDIICGLEMVKHACGLATMQMGEFIPSASDGIDSYCIREPIGVCAGICSLNHPATVSLWMFPIAVTCGNTFVLKPCETHPGASMLLAALAMESGLPDGVLNIVHGSHDIINYICDDEDIKAVSFSSSSSVGKHIYAGAAATAKKVQSHFGGKSHAIIMPDANMEATLSALVDAGLGTVGRTYMAIDIIVSVGSSTLWEEKLVECAKALKVNVGTDPNADLGPVTTKEVKNRFCKLVQSGIEDGARVLLDGRDIVVSGYENGNFIGPTILSGVTTDMECYKEEFFGPVLLFMQADDLEEAISIVNRNKNRNGASIFTTSGIYARKFQSEVEVGMVGINVAVTVPLPSSFNDKVGLEFYTQLKRVAQQWKNSPSVGVSMAVPSPSERRLRSRAAPSMLVSTSEKDLPGMKHRSLPPLPSTSERDSPSVAVLLPNPRITPTGLTNERSTSSPPTPDRNLHGQGLSLISTLSSEGDVSNQDLSPAMLSARDRDLPGQAMSMATSRSSERLYIPQKSHWNETPRADSIPSSSERIHATGISNNSSCFGLSCRGGLYVPTSRDTICLINHANDSTGPSRRINSMCQSSERVYMLATSHLNDTMGQTLQRTDTSLFPSSERHYAPPSSDGNDHISLASHTNVALQSTSDRMFLSSLSERDDNMASTASQQGESLTSTSERMYIPPLVHRNAGMAPKSEWLCIPTPAGTQRMYTQGPMVSADEFQSQGASLTLPASQRM 1036
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20809568 20818381 + PI0010362.1 Cmetu08g0424 363235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g0424 1036 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 218 672 IPR010061 GO:0004491
Cmetu08g0424 1036 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 455 649 IPR016163 GO:0016620
Cmetu08g0424 1036 MobiDBLite consensus disorder prediction 913 932 - -
Cmetu08g0424 1036 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 229 454 IPR016162 GO:0016491
Cmetu08g0424 1036 SUPERFAMILY ALDH-like 217 674 IPR016161 GO:0016491
Cmetu08g0424 1036 MobiDBLite consensus disorder prediction 740 764 - -
Cmetu08g0424 1036 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 72 688 IPR010061 GO:0004491
Cmetu08g0424 1036 CDD ALDH_F6_MMSDH 217 672 IPR010061 GO:0004491
Cmetu08g0424 1036 MobiDBLite consensus disorder prediction 676 764 - -
Cmetu08g0424 1036 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 455 654 - -
Cmetu08g0424 1036 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 214 461 - -
Cmetu08g0424 1036 MobiDBLite consensus disorder prediction 957 977 - -
Cmetu08g0424 1036 Pfam Aldehyde dehydrogenase family 220 648 IPR015590 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g0424 K00140 - - csv:101207178 1912.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1175 Cmetu-Chr1:1445887 Cmetu08g0424 Cmetu-Chr8:20809568 1.60E-168 dispersed
Cmetu08g0424 Cmetu-Chr8:20809568 Cmetu11g2423 Cmetu-Chr11:8496559 3.00E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1987 . 7 454 Aldehyde Dehydrogenase Gene Family AT3G24503 71.5 5.0e-188 654.4
Cmetu05g1877 . 58 542 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 6.4e-159 557.8
Cmetu02g1050 . 46 551 Aldehyde Dehydrogenase Gene Family AT3G24503 53.3 4.3e-155 545.0
Cmetu02g1050 . 4 551 Aldehyde Dehydrogenase Gene Family AT3G48000 77.4 6.3e-253 870.2
Cmetu05g1877 . 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 75.1 6.7e-247 850.1
Cmetu02g1987 . 23 454 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 9.3e-140 494.2
Cmetu05g1877 . 1 386 Aldehyde Dehydrogenase Gene Family AT1G23800 75.8 5.6e-169 590.9
Cmetu02g1050 . 4 395 Aldehyde Dehydrogenase Gene Family AT1G23800 72.7 4.4e-166 581.3
Cmetu02g1987 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 2.9e-101 365.9
Cmetu07g0284 . 3 486 Aldehyde Dehydrogenase Gene Family AT4G34240 62.8 1.9e-180 629.4
Cmetu07g0245 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.0 1.6e-176 616.3
Cmetu07g0284 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 73.0 1.9e-180 629.0
Cmetu07g0245 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 5.4e-175 610.9
Cmetu05g0548 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 5.1e-117 418.3
Cmetu07g0297 . 1 462 Aldehyde Dehydrogenase Gene Family AT4G36250 58.5 3.1e-166 582.0
Cmetu05g0548 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.7 4.4e-157 551.6
Cmetu11g2423 . 37 540 Aldehyde Dehydrogenase Gene Family AT1G79440 77.0 4.9e-234 807.4
Cmetu01g1175 . 23 483 Aldehyde Dehydrogenase Gene Family AT2G14170 82.6 6.1e-225 777.3
Cmetu08g0424 . 218 643 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.3e-171 599.4
Cmetu02g0096 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 1.9e-251 865.1
Cmetu02g0096 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 80.9 3.1e-254 874.4
Cmetu05g0490 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 90.4 1.5e-269 925.2
Cmetu12g1329 . 21 548 Aldehyde Dehydrogenase Gene Family AT5G62530 77.1 2.6e-254 874.8
Cmetu11g1721 . 41 627 Aldehyde Dehydrogenase Gene Family AT3G66658 76.3 1.3e-275 945.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010728 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 1 3 1 0 32