Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g0553 ATGACTAGCAATATCGTAATGACCCCAGATAGAGAACTTAGAAAGTCGGGTCGGTACATAGATAATCGTCCCTTTGGGATTCAAGCACAAGAGGGCACCCATGGGAGGCCTAGATTTCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCCAATCCATCACCGAGCAACATAGCCTCAAGTTCCAGCATTAGAACCTCATCTTCTAATGATGCAAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAAATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCTGCTGAGAAATCATTCTATGAGGTCCTTGGAAAAAAGTATCCTCCTTCCCCCGAGGTAAATAGATCTCTGGCCAATCAATACACTGATAGCTTGAATGAAGAACTTTGTGGAGAGAATAGTAATTACCTGAGTAATTACAGTAGTACTTCTTATCGTGGCGATGATGACCCTCAAACTCTGAGTGAAGATGTATTTCAAATCAGAAGCGCTTTAGGTGATACCATATCTCCATCATCTAATAGTTCCTCAAATAGTATAATTAGTGGGGGTGATGGGTGGGTGGACTTCTCTAATAATATAATTCAAGTTCCTGAGCCTAATAACAGAAGCCAATCGATTTGGCAGTTTCAAAAAGGCTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAAATTGTGTCTTGATTTTGAGGTAAACGGGTCAGCAACTCAGGGTCCCGATGAGGGTACGAGCCAAATATATTTGAAGGCAGCTAGAAAGGATCAGAGAAATGTTTTGTCACTTGAATCGCGTGGTAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCCGTATTTGCAGAGTCGCCTCTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCCGGAGAGGGACATGAACGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAGCTAAAAGTGTCTAATGGAGGTAGGGGTCGTCGGAAGAAGCAGAGTGCGAAAAAAGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGTGATGGAAGTCAGAGGTTAGCTAGTTGTTTTGCTGATGGTCTGGAGGCACGGTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGGACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGCCCATTTAGAAAGATCTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCAGAGAGTGCAACTAGACTTCATGTCATAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGGTGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGATTTCGTCCTGCAGAGAGAGTTGAGGAGACAGGTCGTCGTTTGGCAGCTTATGCAGAGAGTTTCAATGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAACTGTTACTGTCGAAGATCTCAATATTGATCAAGATGAGTTCCTAGTTGTTAACTGTTTGTATCGAGCAAAAAATTTACTTGATGAGAGTGTTTCTACAGAGAGTGCTAGAAATACTGTTCTTAAATTGGTACACAAAATTAGTCCTAACTTATTCATCAGTGGCGTTGTCAATGGAGCATATAATGCTCCTTTCTTTGTTACTCGATTCCGAGAGGCTTTGTTTCACTTTTCTGCTATTTTTGATATGCTTGAAACTGTTGTACCTCGCGAGGATTATGAGAGAATGCTATTGGAGAGAGAGATCTTTGGCAGGGAAGCTTTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCCTTTTGCTCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACGGTCAAGTTACCACAGAGATTTTCTGATTGATGAAGATAGCAGATGGTTACTTCAGGGTTGGAAAGGTCGAATTATATATGCCATCTCTACATGGAAACCTTCTGTAGAGTAA 2283 41.17 MTSNIVMTPDRELRKSGRYIDNRPFGIQAQEGTHGRPRFQNTIFSHNFQEFDCLLPNPSPSNIASSSSIRTSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEVNRSLANQYTDSLNEELCGENSNYLSNYSSTSYRGDDDPQTLSEDVFQIRSALGDTISPSSNSSSNSIISGGDGWVDFSNNIIQVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLCLDFEVNGSATQGPDEGTSQIYLKAARKDQRNVLSLESRGRKNPHDENGDLEEERSSKQAAVFAESPLRSKMFDIVLLCSAGEGHERLVSFRQELHNAKIKSMLQSGQLKVSNGGRGRRKKQSAKKEVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAESATRLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETVTVEDLNIDQDEFLVVNCLYRAKNLLDESVSTESARNTVLKLVHKISPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDYERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFAPEIFERAVEKVRSSYHRDFLIDEDSRWLLQGWKGRIIYAISTWKPSVE 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22272977 22275259 + PI0020682.1 Cmetu08g0553 363364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g0553 760 ProSiteProfiles GRAS family profile. 376 756 IPR005202 -
Cmetu08g0553 760 MobiDBLite consensus disorder prediction 287 313 - -
Cmetu08g0553 760 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 312 750 IPR005202 -
Cmetu08g0553 760 Pfam GRAS domain family 385 756 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g0553 K27753 - - csv:101205887 1461.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1047 Cmetu-Chr6:26919650 Cmetu08g0553 Cmetu-Chr8:22272977 7.40E-60 dispersed
Cmetu07g1514 Cmetu-Chr7:6079524 Cmetu08g0553 Cmetu-Chr8:22272977 5.30E-40 dispersed
Cmetu08g0553 Cmetu-Chr8:22272977 Cmetu11g2092 Cmetu-Chr11:19854606 4.10E-64 dispersed
Cmetu11g2076 Cmetu-Chr11:6711531 Cmetu08g0553 Cmetu-Chr8:22272977 5.60E-153 wgd
Cmetu12g1542 Cmetu-Chr12:23727917 Cmetu08g0553 Cmetu-Chr8:22272977 3.70E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g744 . . . . Bpe04g01322 . Bma04g01386 . Cmo06g00292 Cmo14g00135 . . . . . . Cpe08g01167 . . . . . . . . . . . . . . . Cone10ag0315 . Cone19ag1332 . . . Cme04g02627 . Blo09g00319 Bda03g01464 . . . . . Sed04g1261 . . Cma06g00294 Cma14g00142 Car06g00255 Car14g00115 Cpe03g00113 . Bhi11g02267 Tan08g2009 Cmetu08g0553 Lac10g3111 . . . Cla10g02012 Cam10g2080 Cec10g2124 Cco10g2105 Clacu10g2088 Cmu10g2833 Cre10g2227 Lsi03g02114 Csa03g03178 Chy04g02153 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g0553 . 80 758 GRAS Transcription Factor Family AT2G37650 54.3 4.4e-198 688.3
Cmetu12g1542 . 313 695 GRAS Transcription Factor Family AT3G46600 56.4 7.9e-126 448.0
Cmetu08g0772 . 48 467 GRAS Transcription Factor Family AT3G49950 60.3 8.2e-136 480.7
Cmetu06g2197 . 402 771 GRAS Transcription Factor Family AT3G60630 51.5 5.3e-94 342.4
Cmetu07g1514 . 66 444 GRAS Transcription Factor Family AT5G41920 71.1 1.2e-150 530.0
Cmetu08g1297 . 458 834 GRAS Transcription Factor Family AT5G41920 56.6 3.5e-115 412.1
Cmetu08g0213 . 1 609 GRAS Transcription Factor Family AT5G66770 59.7 1.5e-183 639.8
Cmetu07g1100 . 1 591 GRAS Transcription Factor Family AT5G66770 55.1 5.0e-171 598.2
Cmetu11g2092 . 57 545 GRAS Transcription Factor Family AT1G50600 59.2 1.5e-163 573.2
Cmetu06g1047 . 46 544 GRAS Transcription Factor Family AT1G50600 58.4 1.9e-161 566.2
Cmetu04g1140 . 103 541 GRAS Transcription Factor Family AT1G50600 56.1 3.7e-141 498.8
Cmetu04g0683 . 202 593 GRAS Transcription Factor Family AT1G50600 57.9 4.9e-133 471.9
Cmetu09g1879 . 44 567 GRAS Transcription Factor Family AT1G14920 66.1 1.7e-197 686.0
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT1G14920 56.1 4.6e-155 545.0
Cmetu06g2650 . 26 387 GRAS Transcription Factor Family AT1G55580 50.9 7.6e-103 371.3
Cmetu09g1879 . 1 565 GRAS Transcription Factor Family AT1G66350 54.8 3.3e-163 572.0
Cmetu06g1601 . 1 553 GRAS Transcription Factor Family AT1G66350 55.6 7.7e-160 560.8
Cmetu11g2092 . 19 545 GRAS Transcription Factor Family AT5G48150 65.9 1.3e-193 672.9
Cmetu06g1047 . 17 544 GRAS Transcription Factor Family AT5G48150 57.5 6.0e-170 594.3
Cmetu04g1140 . 96 541 GRAS Transcription Factor Family AT5G48150 57.8 2.9e-148 522.3
Cmetu04g0683 . 128 593 GRAS Transcription Factor Family AT5G48150 53.3 3.3e-136 482.3
Cmetu01g2186 . 179 570 GRAS Transcription Factor Family AT5G48150 53.0 2.2e-119 426.4
Cmetu09g1879 . 46 564 GRAS Transcription Factor Family AT2G01570 67.0 3.6e-201 698.4
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT2G01570 58.1 5.7e-159 558.1
Cmetu09g1879 . 1 565 GRAS Transcription Factor Family AT1G66350 54.8 3.3e-163 572.0
Cmetu06g1601 . 1 553 GRAS Transcription Factor Family AT1G66350 55.6 7.7e-160 560.8
Cmetu09g1879 . 46 564 GRAS Transcription Factor Family AT3G03450 58.2 4.4e-161 565.1
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT3G03450 57.3 8.9e-154 540.8
Cmetu09g1879 . 42 564 GRAS Transcription Factor Family AT5G17490 55.0 7.7e-147 517.7
Cmetu06g1601 . 1 554 GRAS Transcription Factor Family AT5G17490 50.4 7.4e-134 474.6
Cmetu01g2186 . 1 570 GRAS Transcription Factor Family AT1G21450 57.5 7.1e-173 604.4
Cmetu06g1047 . 168 544 GRAS Transcription Factor Family AT1G21450 52.4 1.3e-113 407.5
Cmetu04g0683 . 225 593 GRAS Transcription Factor Family AT1G21450 50.8 1.8e-107 387.1
Cmetu12g1542 . 321 695 GRAS Transcription Factor Family AT5G59450 56.2 1.0e-126 451.1
Cmetu08g0553 . 309 758 GRAS Transcription Factor Family AT5G59450 50.3 8.1e-124 441.4
Cmetu04g1140 . 1 541 GRAS Transcription Factor Family AT4G17230 58.1 2.2e-173 605.9
Cmetu11g2092 . 1 545 GRAS Transcription Factor Family AT4G17230 50.6 1.9e-145 513.1
Cmetu06g1047 . 49 544 GRAS Transcription Factor Family AT4G17230 52.1 1.2e-134 477.2
Cmetu04g0683 . 220 593 GRAS Transcription Factor Family AT4G17230 51.9 4.4e-110 395.6
Cmetu11g2092 . 134 545 GRAS Transcription Factor Family AT2G04890 66.1 2.1e-160 562.4
Cmetu06g1047 . 148 544 GRAS Transcription Factor Family AT2G04890 58.9 7.2e-140 494.2
Cmetu04g0683 . 206 593 GRAS Transcription Factor Family AT2G04890 56.0 4.1e-127 451.8
Cmetu04g1140 . 161 541 GRAS Transcription Factor Family AT2G04890 58.0 3.8e-125 445.3
Cmetu10g0531 . 1 462 GRAS Transcription Factor Family AT1G50420 61.3 9.8e-157 550.4
Cmetu02g0988 . 1 435 GRAS Transcription Factor Family AT1G50420 58.0 6.4e-148 521.2
Cmetu06g2197 . 408 771 GRAS Transcription Factor Family AT4G00150 56.0 1.2e-105 380.9
Cmetu07g1100 . 1 591 GRAS Transcription Factor Family AT3G50650 51.3 2.6e-153 539.3
Cmetu08g0213 . 1 609 GRAS Transcription Factor Family AT3G50650 51.1 6.3e-152 534.6
Cmetu08g1297 . 235 832 GRAS Transcription Factor Family AT3G54220 63.9 2.5e-203 705.7
Cmetu07g1514 . 74 442 GRAS Transcription Factor Family AT3G54220 64.2 7.6e-136 481.5
Cmetu08g1528 . 90 490 GRAS Transcription Factor Family AT4G37650 67.3 1.2e-158 557.0
Cmetu11g0520 . 97 491 GRAS Transcription Factor Family AT4G37650 55.2 1.6e-123 440.3
Cmetu11g1296 . 64 455 GRAS Transcription Factor Family AT4G37650 50.6 1.4e-111 400.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003169 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 2 1 1 1 1 1 4 1 4 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8365 PF03514 GRAS 5.90E-117 CL0063 Cmetu TF