Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g0797 ATGGGAGCTTTAGAGACGGCCGGAGATGATTTGGAGAAAGGGTTGCGGCGGACGGCGGGGGAGAGGGATTGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGTGTTGAGTGTGGAGTTGGAATTGAATTGGGGTGTTGTTGTAAGAATGATTTGGGTGCTGCTCATAAGCATTGTGCTGAAGCTTGGTTCAATATCAGAGGAAACAAGACGTGTGAAATATGTCATTCTATAGTAAAAAATGTGATGGTATCACATGAACTTGAACAAATGGAACAACACCATGAGTCGAACAATGGGGTGGTATCGATAGCTACAGTTGCAGCATCGGTGGCTGCTGCTCCCCGTGGTGCCCGGAGCTTTTGGCAGGTTCATCGAGTCCTTAACATTCTTCTTGCTTGTATGGTATTTACTTTCGTCATATGTTGGCTCTTCCATTTCAATGTGCCATCATAA 456 45.18 MGALETAGDDLEKGLRRTAGERDCRICHLGLESNSVECGVGIELGCCCKNDLGAAHKHCAEAWFNIRGNKTCEICHSIVKNVMVSHELEQMEQHHESNNGVVSIATVAASVAAAPRGARSFWQVHRVLNILLACMVFTFVICWLFHFNVPS 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15451595 15452724 + PI0023825.1 Cmetu08g0797 363608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g0797 151 ProSiteProfiles Zinc finger RING-CH-type profile. 16 82 IPR011016 GO:0008270
Cmetu08g0797 151 SUPERFAMILY RING/U-box 20 78 - -
Cmetu08g0797 151 Pfam RING-variant domain 24 75 IPR011016 GO:0008270
Cmetu08g0797 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 86 IPR013083 -
Cmetu08g0797 151 PANTHER ZINC FINGER, RING-CH-TYPE 16 150 - -
Cmetu08g0797 151 SMART ringv_2 23 76 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g0797 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu12g1939 Cmetu-Chr12:23949235 Cmetu08g0797 Cmetu-Chr8:15451595 2.10E-24 wgd
Cmetu03g1225 Cmetu-Chr3:25050981 Cmetu08g0797 Cmetu-Chr8:15451595 2.60E-40 wgd
Cmetu08g0797 Cmetu-Chr8:15451595 Cmetu08g1884 Cmetu-Chr8:22550406 9.00E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g828 . . . . Bpe04g01820 Bpe03g01022 Bma04g01279 . Cmo06g00261 Cmo14g00095 . Cma07g01034 . Car07g01016 . . Cpe08g01193 Bhi03g02093 Tan03g0855 Cmetu08g0797 . Hepe04g0791 . . Cla04g00736 Cam04g0750 Cec04g0877 Cco04g0927 Clacu04g0794 Cmu04g0782 Cre04g0837 Cone3ag0384 Cone10ag0353 Cone13ag1373 Cone19ag1368 Lsi01g01511 . . Cme04g02676 Blo07g01162 Blo09g00251 Bda03g01381 Bda05g00947 . . . . Sed02g0773 . Cmo07g01079 Cma06g00260 Cma14g00100 Car06g00229 Car14g00080 Cpe03g00081 Cpe19g00305 Bhi11g01900 Tan08g2063 Cmetu12g1939 . Hepe05g0126 . . Cla10g02055 Cam10g2129 Cec10g2171 . Clacu10g2134 Cmu10g2878 Cre10g2275 Lsi03g02162 Csa03g03129 Chy04g02201 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0445 . 83 570 C3H Transcription Factor Family AT2G31510 76.7 2.1e-231 798.5
Cmetu03g0957 . 77 529 C3H Transcription Factor Family AT2G31510 78.6 2.8e-223 771.5
Cmetu03g0957 . 60 522 C3H Transcription Factor Family AT2G31770 59.3 2.8e-168 589.0
Cmetu05g0445 . 52 544 C3H Transcription Factor Family AT2G31770 56.0 2.8e-168 589.0
Cmetu05g0445 . 66 529 C3H Transcription Factor Family AT2G31760 58.3 9.2e-169 590.5
Cmetu03g0957 . 60 529 C3H Transcription Factor Family AT2G31760 58.1 1.5e-166 583.2
Cmetu08g1631 . 13 170 C3H Transcription Factor Family AT5G06490 54.8 1.5e-47 186.4
Cmetu08g1631 . 13 170 C3H Transcription Factor Family AT5G06490 54.8 1.5e-47 186.4
Cmetu09g1076 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.4e-76 281.2
Cmetu02g1813 . 1 305 C3H Transcription Factor Family AT1G11020 75.0 2.1e-134 475.7
Cmetu04g1459 . 62 220 C3H Transcription Factor Family AT1G50440 75.6 1.0e-66 250.4
Cmetu08g0175 . 5 367 C3H Transcription Factor Family AT5G08750 61.2 3.6e-119 425.2
Cmetu05g1652 . 1 428 C3H Transcription Factor Family AT3G16090 71.3 5.3e-166 581.3
Cmetu03g1808 . 31 185 C3H Transcription Factor Family AT1G22510 65.8 3.2e-56 215.3
Cmetu09g1076 . 1 225 C3H Transcription Factor Family AT5G38895 58.4 1.2e-73 273.9
Cmetu08g0953 . 16 225 C3H Transcription Factor Family AT1G19310 61.2 2.3e-71 265.8
Cmetu03g0100 . 2 163 C3H Transcription Factor Family AT1G19310 62.0 1.3e-50 196.8
Cmetu03g1808 . 35 185 C3H Transcription Factor Family AT1G72175 67.5 1.9e-53 205.7
Cmetu04g0973 . 9 177 C3H Transcription Factor Family AT5G48655 51.1 3.2e-40 162.2
Cmetu08g1384 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 4.6e-159 557.8
Cmetu03g1881 . 6 162 C3H Transcription Factor Family AT5G07040 61.7 9.8e-45 176.8
Cmetu02g0736 . 1 395 C3H Transcription Factor Family AT1G18470 73.7 1.1e-172 603.2
Cmetu03g0957 . 60 522 C3H Transcription Factor Family AT2G31770 59.3 2.8e-168 589.0
Cmetu05g0445 . 52 544 C3H Transcription Factor Family AT2G31770 56.0 2.8e-168 589.0
Cmetu05g0445 . 66 529 C3H Transcription Factor Family AT2G31760 58.3 9.2e-169 590.5
Cmetu03g0957 . 60 529 C3H Transcription Factor Family AT2G31760 58.1 1.5e-166 583.2
Cmetu01g2657 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 2.4e-95 345.9
Cmetu01g0145 . 46 273 C3H Transcription Factor Family AT5G55970 67.7 1.1e-90 330.5
Cmetu08g0175 . 5 367 C3H Transcription Factor Family AT5G63780 57.6 5.4e-115 411.4
Cmetu04g3121 . 1 424 C3H Transcription Factor Family AT3G58030 53.7 3.4e-108 389.0
Cmetu01g2657 . 35 345 C3H Transcription Factor Family AT4G26580 62.5 2.7e-113 405.6
Cmetu01g0145 . 39 336 C3H Transcription Factor Family AT4G26580 61.6 1.8e-109 392.9
Cmetu09g1280 . 20 173 C3H Transcription Factor Family AT4G10150 50.6 4.0e-42 168.7
Cmetu08g0660 . 1 471 C3H Transcription Factor Family AT5G01960 69.1 1.9e-167 585.9
Cmetu10g1321 . 1 463 C3H Transcription Factor Family AT5G01960 59.3 2.9e-152 535.4
Cmetu11g0663 . 1 156 C3H Transcription Factor Family AT2G04240 58.6 5.0e-44 174.5
Cmetu01g2423 . 1 149 C3H Transcription Factor Family AT2G04240 57.1 1.4e-38 156.4
Cmetu05g0470 . 66 275 C3H Transcription Factor Family AT5G19430 54.9 8.0e-57 217.6
Cmetu07g1879 . 130 585 C3H Transcription Factor Family AT5G45290 51.8 2.1e-102 370.2
Cmetu05g0470 . 73 275 C3H Transcription Factor Family AT5G12310 64.8 2.5e-58 222.6
Cmetu02g1872 . 71 364 C3H Transcription Factor Family AT5G05810 53.5 2.5e-76 283.1
Cmetu03g1225 . 58 216 C3H Transcription Factor Family AT5G05830 67.3 1.8e-59 226.1
Cmetu08g1884 . 70 220 C3H Transcription Factor Family AT5G05830 59.6 7.1e-48 187.6
Cmetu08g0797 . 12 151 C3H Transcription Factor Family AT5G05830 58.6 6.5e-41 164.5
Cmetu09g1076 . 1 226 C3H Transcription Factor Family AT5G15790 60.8 5.9e-75 277.7
Cmetu03g1911 . 1 235 C3H Transcription Factor Family AT3G55530 80.9 7.2e-96 347.4
Cmetu01g1181 . 1 273 C3H Transcription Factor Family AT1G63900 76.3 5.2e-118 421.0
Cmetu06g0468 . 10 393 C3H Transcription Factor Family AT2G44580 53.3 7.7e-120 427.6
Cmetu07g0726 . 3 314 C3H Transcription Factor Family AT5G20910 58.7 1.2e-99 360.1
Cmetu05g1652 . 119 419 C3H Transcription Factor Family AT1G65040 68.0 6.6e-109 391.0
Cmetu08g0953 . 17 227 C3H Transcription Factor Family AT2G23780 62.3 1.4e-73 273.1
Cmetu03g0100 . 2 165 C3H Transcription Factor Family AT2G23780 53.5 1.3e-42 170.2
Cmetu04g1536 . 1 318 C3H Transcription Factor Family AT3G10810 54.2 1.9e-78 290.4
Cmetu09g1080 . 1 170 C3H Transcription Factor Family AT1G63840 58.0 4.4e-48 188.0
Cmetu11g2005 . 1 152 C3H Transcription Factor Family AT1G63840 51.6 4.4e-40 161.4
Cmetu09g0427 . 1 354 C3H Transcription Factor Family AT1G68070 62.3 1.1e-117 420.2
Cmetu06g0430 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 1.4e-85 313.5
Cmetu07g2272 . 4 181 C3H Transcription Factor Family AT1G76410 56.1 1.6e-51 199.5
Cmetu06g0558 . 6 154 C3H Transcription Factor Family AT1G76410 55.9 3.3e-44 175.3
Cmetu03g0748 . 1 397 C3H Transcription Factor Family AT1G80400 54.7 2.5e-113 406.0
Cmetu06g0558 . 13 145 C3H Transcription Factor Family AT2G17450 57.8 4.6e-38 154.8
Cmetu05g0445 . 83 570 C3H Transcription Factor Family AT2G31510 76.7 2.1e-231 798.5
Cmetu03g0957 . 77 529 C3H Transcription Factor Family AT2G31510 78.6 2.8e-223 771.5
Cmetu08g1631 . 7 169 C3H Transcription Factor Family AT2G35910 61.8 3.5e-53 205.3
Cmetu04g1794 . 11 158 C3H Transcription Factor Family AT2G35910 55.2 1.1e-43 173.7
Cmetu06g1281 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 3.6e-128 454.9
Cmetu05g1224 . 35 324 C3H Transcription Factor Family AT2G41980 74.5 4.7e-128 454.5
Cmetu06g0293 . 62 319 C3H Transcription Factor Family AT2G41980 80.2 4.7e-128 454.5
Cmetu10g1619 . 47 304 C3H Transcription Factor Family AT2G41980 79.8 1.1e-126 449.9
Cmetu09g0559 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 2.2e-125 445.7
Cmetu11g0718 . 43 273 C3H Transcription Factor Family AT2G41980 62.5 2.4e-92 335.9
Cmetu06g2606 . 126 400 C3H Transcription Factor Family AT3G06140 62.0 6.8e-94 341.3
Cmetu04g1396 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 6.4e-86 314.7
Cmetu02g1086 . 58 366 C3H Transcription Factor Family AT3G47990 69.6 5.1e-127 451.1
Cmetu12g1918 . 64 204 C3H Transcription Factor Family AT3G47990 61.8 9.5e-49 191.0
Cmetu07g2272 . 4 185 C3H Transcription Factor Family AT1G20823 57.3 4.2e-53 204.9
Cmetu06g0558 . 13 154 C3H Transcription Factor Family AT1G20823 58.9 2.4e-45 179.1
Cmetu11g0764 . 40 411 C3H Transcription Factor Family AT3G18930 53.8 3.3e-84 309.3
Cmetu06g2558 . 20 235 C3H Transcription Factor Family AT5G66070 73.1 2.2e-74 275.8
Cmetu08g1127 . 3 272 C3H Transcription Factor Family AT5G02750 53.0 1.6e-66 250.0
Cmetu02g0736 . 5 473 C3H Transcription Factor Family AT1G73950 71.9 2.4e-194 675.2
Cmetu09g1280 . 1 160 C3H Transcription Factor Family AT1G33480 51.9 3.1e-40 162.5
Cmetu09g0427 . 15 252 C3H Transcription Factor Family AT2G01735 61.3 4.2e-74 275.0
Cmetu06g0430 . 60 269 C3H Transcription Factor Family AT2G01735 52.8 1.0e-51 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000737 5 3 3 3 4 2 4 2 3 2 3 3 5 2 2 5 3 4 5 2 2 3 3 3 3 3 3 4 3 2 94