Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g0881 ATGGGACTTTGCTTTAGTAAGTCCGAAACCAGAGATGATGAGTCTGAGCATCATGTTGAGTTTGCTGCTGGAAATGTGCATCTAATCACAACCAAAGAAGCTTGGGACCAAAAGTTGGAAGAAGCTAATACCAGCGGCAAAATTGTGATAGCGAACTTCAGTGCAACATGGTGTGGTCCTTGCAAGGTGGTTGCTCCGTTCTACAGTGAATTGTCAGAGAAATACGAGTCTTTGATGTTCCTTGTAGTTGATGTTGATGAATTAACCGACTTCAGCACTTCTTGGGATATCAAAGCTACACCTACCTTCTTCTTCCTCAAAGAAGGACGGCAAATCGACAAGCTTGTCGGAGCGAATAAAATCGAACTAGAGAAGAAAATTACTGCAGTGGCAGATTCTCTCCCCCCTAATCGGATATGA 420 43.33 MGLCFSKSETRDDESEHHVEFAAGNVHLITTKEAWDQKLEEANTSGKIVIANFSATWCGPCKVVAPFYSELSEKYESLMFLVVDVDELTDFSTSWDIKATPTFFFLKEGRQIDKLVGANKIELEKKITAVADSLPPNRI 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14237855 14241824 + PI0021944.1 Cmetu08g0881 363692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g0881 139 PRINTS Thioredoxin family signature 96 107 - -
Cmetu08g0881 139 PRINTS Thioredoxin family signature 57 66 - -
Cmetu08g0881 139 PRINTS Thioredoxin family signature 49 57 - -
Cmetu08g0881 139 ProSiteProfiles Thioredoxin domain profile. 17 132 IPR013766 -
Cmetu08g0881 139 SUPERFAMILY Thioredoxin-like 20 130 IPR036249 -
Cmetu08g0881 139 ProSitePatterns Thioredoxin family active site. 50 68 IPR017937 -
Cmetu08g0881 139 CDD TRX_family 39 127 - -
Cmetu08g0881 139 PANTHER THIOREDOXIN 26 128 - -
Cmetu08g0881 139 Gene3D Glutaredoxin 1 137 - -
Cmetu08g0881 139 Pfam Thioredoxin 29 128 IPR013766 -
Cmetu08g0881 139 FunFam Thioredoxin H9 1 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g0881 K03671 - - csv:101211423 275.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1744 Cmetu-Chr2:8385750 Cmetu08g0881 Cmetu-Chr8:14237855 1.10E-10 dispersed
Cmetu08g0881 Cmetu-Chr8:14237855 Cmetu09g0855 Cmetu-Chr9:20800124 1.20E-38 dispersed
Cmetu08g0881 Cmetu-Chr8:14237855 Cmetu04g2799 Cmetu-Chr4:3952575 1.80E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008269 2 2 0 1 0 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 0 4 1 1 35