Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1254 ATGGCTGGAATTGACTACATGGGTTTAAAGGTCAGTCAAGATGAAGAACCGGTTGCGGTTAGCATTGTCTCGTCTGGTGGGTATGAGGATGATACAAATGATACAGATGTGTTGATCTACAGTGGCCAGGGTGGAGTGAACAGGAAGGATAAGGAATCAATAGATCAAAAGCTTGAAAGGGGTAATCTTGCTCTGGAGAAGAGCTTGCATCGTGGAAATGATGTCAGAGTTATTCGAGGGGTGAGAGATTTTAGTAACCCAACAGGGAAGATCTATGTTTATGATGGTCTTTATAAAATCCAAGAGTCTTGGGTAGAGAAAGGAAAATCTGGCTGTAATGTATTTAAATACAAATTGGTGCGATTACCTGGACAGCGGGAAGCATTTTTGAATTGGAAATTAGTCCAACAATGGAAGGATGGAAATGTATCTCGAATTGGGGTCATAATACCAGATCTGGCTTCTGGTGCAGAAAGTCTACCTGTCTCACTTGTTAATGATGTTGATGACGAGAAGGGCCCTGCATATTTCACATATTATGCTGGTCTCAAATATTTAAAACCAGTATACTCGATGGAACCTTCAGCTGGCTGTAACTGTGTTGGTGGATGCCTTCCAGGCAATATCAATTGCCTTTGCATGCAGAAAAATGGTGGATATCTCCCCTATAGTTCAAATGGGGTTCTTGCAAGTCAACAGTCTATGATATATGAATGTGGAGCCTCATGTCAATGCCCTCCCAATTGCAGGAACCGTGTGTCCCAAGGAGGACTCAAATTTCGGCTGGAGGTATTCAGAACTAAAGGTAAAGGCTGGGGCCTAAGGTCTTGGGATCCCATTCGTGCTGGAGCTTTTATCTGCCAATATGCAGGAGAAGTCATCGATAGTTCAAAGGCTAAGGACTCTGTGCGGGACAATGAAGATGGTTATATCTTTGATGCCACACATTCTTATCCAAACCTTGATGTTATGTCTGGTGATTCTGATGGGCCTCCAAGACTCCCATTTCCCCTAGTTATTAGTGCAAAAAATGCTGGCAATGTTGCTCGTTTTATGAACCATAGTTGCTGTCCAAATGTATACTGGAAACCAATTATACGTGAAAATAAAGGCGAGCATGATGTCCATATTGCCTTTCATGCAATCAGGCATATACCTCCCATGATGGAGTTGACGTATGATTATGGAATAATCCCACCTGAAAGCGCTGATGGAAGGAAGATCAATTGCCTATGTGGGTTTTTAAAATGTAGAGGCTATTTTTGTTAG 1269 42.24 MAGIDYMGLKVSQDEEPVAVSIVSSGGYEDDTNDTDVLIYSGQGGVNRKDKESIDQKLERGNLALEKSLHRGNDVRVIRGVRDFSNPTGKIYVYDGLYKIQESWVEKGKSGCNVFKYKLVRLPGQREAFLNWKLVQQWKDGNVSRIGVIIPDLASGAESLPVSLVNDVDDEKGPAYFTYYAGLKYLKPVYSMEPSAGCNCVGGCLPGNINCLCMQKNGGYLPYSSNGVLASQQSMIYECGASCQCPPNCRNRVSQGGLKFRLEVFRTKGKGWGLRSWDPIRAGAFICQYAGEVIDSSKAKDSVRDNEDGYIFDATHSYPNLDVMSGDSDGPPRLPFPLVISAKNAGNVARFMNHSCCPNVYWKPIIRENKGEHDVHIAFHAIRHIPPMMELTYDYGIIPPESADGRKINCLCGFLKCRGYFC 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 662323 665395 + PI0014022.1 Cmetu08g1254 364065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1254 422 SMART preset_2 150 244 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Cmetu08g1254 422 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 413 - -
Cmetu08g1254 422 Pfam SET domain 271 396 IPR001214 GO:0005515
Cmetu08g1254 422 Pfam SAD/SRA domain 2 125 IPR003105 -
Cmetu08g1254 422 Gene3D SET domain 144 421 IPR046341 -
Cmetu08g1254 422 SMART G9a_1 1 125 IPR003105 -
Cmetu08g1254 422 ProSiteProfiles Post-SET domain profile. 406 422 IPR003616 -
Cmetu08g1254 422 SMART set_7 260 402 IPR001214 GO:0005515
Cmetu08g1254 422 Gene3D - 1 143 IPR036987 -
Cmetu08g1254 422 ProSiteProfiles SET domain profile. 260 396 IPR001214 GO:0005515
Cmetu08g1254 422 ProSiteProfiles Pre-SET domain profile. 196 257 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Cmetu08g1254 422 SUPERFAMILY SET domain 136 412 IPR046341 -
Cmetu08g1254 422 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 421 IPR025794 GO:0016571
Cmetu08g1254 422 SUPERFAMILY PUA domain-like 1 143 IPR015947 -
Cmetu08g1254 422 ProSiteProfiles YDG domain profile. 1 121 IPR003105 -
Cmetu08g1254 422 Pfam Pre-SET motif 154 252 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1254 K24405 - - csv:101218938 866.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1800 Cmetu-Chr4:8008994 Cmetu08g1254 Cmetu-Chr8:662323 9.70E-13 dispersed
Cmetu06g2698 Cmetu-Chr6:3029600 Cmetu08g1254 Cmetu-Chr8:662323 6.10E-83 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g393 . . . . . . Bma04g01366 . Cmo06g00182 . Cma03g00294 Cma07g01222 Car03g00256 Car07g01177 Sed14g0761 Cpe10g01001 Cpe08g01258 Bhi03g02580 Tan03g0565 Cmetu08g1254 . Hepe04g0575 . . Cla04g00646 . . . . . . Cone3ag0476 Cone10ag0443 Cone13ag1449 Cone19ag1450 Lsi01g01617 Csa04g02152 Chy08g00110 Cme04g02784 Blo07g01104 Blo09g00300 Bda03g01442 . . Bpe02g00065 . . . Cmo03g00306 Cmo07g01265 Cma06g00192 . Car06g00167 . . Cpe19g00153 Bhi11g01717 . . . . . . Cla10g02146 . . . . . . Lsi03g02278 Csa03g03006 Chy04g02313 Cme08g02102
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1254 . 1 421 Su(var)3-9 homologs AT5G04940 56.0 1.6e-136 483.8
Cmetu08g1254 . 1 421 Su(var)3-9 homologs AT1G73100 57.6 6.6e-143 505.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004080 1 3 2 2 2 1 2 1 1 1 1 1 2 1 2 2 1 3 2 1 1 1 1 1 1 1 1 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8407 PF00856 SET 1.00E-16 No_clan Cmetu TR