Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1280 ATGATTGATCCCATGGGGAAGAAACACAGAGTTCATGTCTCTCGGGAAGGTGGAGGACGGAGAAGAACGGTGAATATGGAAAACAGTGCTGGAGGAGGAAGTTCTGCAAATATGGGGTTCCCTAGGATTAGGCTCAATGAAAGAATTCTTTCTTCCTTGTCTCGAAGATCTGTTGCTGCTCACCCTTGGCACGATTTGGAGATCGGACCCGGTGCACCGACGGTTTTCAATTGTGTTGTAGAAATTGGCAAAGGCAGCAAGGTTAAATATGAGCTTGACAAGGCTAGCGGCCTTATAAAAGTCGACCGCGTACTTTACTCATCGGTTGTTTATCCACACAATTATGGTTTCATCCCACGTACAATTTGTGAAGATAGTGATCCTATGGATGTTTTGGTACTGATGCAGGAGCCTGTGCTACCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCTATGATTGACCAAGGAGAAAGGGATGACAAAATCATAGCAGTATGTGCTGATGACCCTGAATTCCGCCATTATACAGACATCAAGGAGATTCCCCCACACCGTCTGGCCGAAATTCGCCGGTTCTTTGAGGACTACAAGAAGAACGAAAACAAGAAAGTCGATGTGGAAGACTTCCTGCCAGCAGAAGCTGCCGTTGATGCCATTAAGTACTCCATGGACTTGTATGCTGCCTACATAGTTGAAAGCTTGAGGCAGTAA 720 46.25 MIDPMGKKHRVHVSREGGGRRRTVNMENSAGGGSSANMGFPRIRLNERILSSLSRRSVAAHPWHDLEIGPGAPTVFNCVVEIGKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAVDAIKYSMDLYAAYIVESLRQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21719213 21722075 + PI0028372.1 Cmetu08g1280 364091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1280 239 FunFam Soluble inorganic pyrophosphatase 4 57 235 - -
Cmetu08g1280 239 ProSitePatterns Inorganic pyrophosphatase signature. 125 131 - -
Cmetu08g1280 239 SUPERFAMILY Inorganic pyrophosphatase 55 234 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmetu08g1280 239 MobiDBLite consensus disorder prediction 1 33 - -
Cmetu08g1280 239 MobiDBLite consensus disorder prediction 1 22 - -
Cmetu08g1280 239 CDD pyrophosphatase 75 227 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmetu08g1280 239 Pfam Inorganic pyrophosphatase 78 229 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmetu08g1280 239 PANTHER INORGANIC PYROPHOSPHATASE 39 239 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmetu08g1280 239 Gene3D Inorganic pyrophosphatase 57 235 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmetu08g1280 239 Hamap Inorganic pyrophosphatase [ppa]. 74 230 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1280 K01507 - - csv:101222890 466.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g1280 Cmetu-Chr8:21719213 Cmetu11g2151 Cmetu-Chr11:1959884 3.20E-92 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g997 . Blo16g00052 . . . Bpe13g00439 . . . . Cma03g00738 Cma07g00478 Car03g00674 Car07g00421 Sed14g1131 Cpe19g00816 Cpe10g00622 Bhi03g01322 Tan03g1998 Cmetu08g1280 . . . . . . . . . . . Cone8ag0818 Cone12ag0770 . . Lsi01g00667 . . Cme08g00859 . . Bda11g01859 . . . . Bma06g00117 . Cmo03g00767 Cmo07g00478 . . . . . . . . . . . . . . . . . . . . . Csa06g03255 Chy02g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000387 7 6 4 6 6 3 5 2 3 3 2 3 6 3 2 5 3 4 6 2 3 4 2 2 3 2 3 12 11 3 126