Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1425 ATGGGACCTGCATGGAGGCAGCTCAAGGTTATGCTCCGCAAGAACTGGCTCCTCAAAATTCGCCACCCTTTCATCACCTCTGCAGAGATTTTACTTCCGACTGTGGTGATGTTGTTACTTATAGCCGTAAGGACGCAAGTTGATAACACAGTCCATCCTCCGCAACCGCATATACAGAAAGGAATGTTCGTAGAAGTTGGCAAAGGTATATCCCCAAGTTTCCAAGAAGTTCTGGTGTCACTGAAGAAAAATGGAGAATATTTGGCTTTTGCACCAGACACAGTCGAGACAAAGACCATGCTACATTTGATGTCATTAAAATTTCCCCTTTTAGAGGTAGTTACTAGAGTTTACAAAGATGAACAAGAGCTGGAAGCCTACATTCGTTCTGATCTATATGGAAGCTGTAATGAACTTGAACTGTTCAAATCCCAAAATAAAGGAGCCGTGGTATTCCATGAGCAAGGTCCACAGTTATTTGATTATAGCATTCGTCTCAATCATACTTGGGCTTTCTCAGGATTTCCCAATGTTAGATCCATCATGGACATGAATGGTCCGTATCTGAATGACTTGGAACTGGGTGCAACTAATATACCAACAATGCAATATAGCTTCAGTGGATTTTTAACTCTTCAGCAAGTCATGGATTCATTCATAATATTTGCTTCCCGAGAAATGGAAACTAATATTCTCCATGTAAATAGTAAACATACTTTATCAAACTTCTCTAGTAGAACTTCATTGCCGAACATGCCCTGGACTCAATTTAGCCCTTCAAAAATACGAATTGCCCCTTTCCCAACTCGGGAGTATGTCGATGATGAATTCCAATCTATTGTCAAGAAAGTGATGGGTGTGTTGTATCTGTTGGGATTTCTGTACCCAATTTCTCGCCTTATCAGCTATTATGCATTTGAGAAGGAAGAGAAGATCAAAGAAGGCCTCTACATGATGGGTTTGAAAGATTGGATATTCCATCTCTCTTGGTTTATTTCATATGCTGTGCAGTTTTCAATATCTGCTGGAATTATCACCTTCTGCACGATGCATAACCTTTTCAAGTACAGTGATAAGACAGTGGTCTTCATCTATTTCTTTTCATTTGGATTAAGTGCAATCATGTTTTCATTTTTGATCTCTACATTCTTCAAACGAGCGAAAACTGCTGTGGCAGTGGGAACACTTTCTTTTCTAGGTGCCTATTTTCCTTACTACACCGTAAATGATGAAACTGTGTCCATGATAGTGAAGACAACTGCTTCATTGTTTTCACCAACGGCTTTTGCTCTAGGGTCTATTAACTTTGCAGATTATGAACGTGCTCGTGTTGGACTTCGATGGAGCAACCTGTGGAGGGCATCCTCTGGAGTAAACTTTTTGGTGTGTCTTTTAATGATGTTCTTTGATGCGCTGCTGTACTGTGCAATTGGTCTTTACATGGACAAGGTCCTTTCAAGGGAAAATGGGTTGGGTTGTTCATGGAGCTGCTTTCTCCGCAATTTCTTCTCGAAAAAAAGGACTATTGTAGAAAATCAGACTCCTGTAGAATGTAAAATTGCTGATGCAGAAATTGCTAATGCGTCTAGAAATGATGTCTTTGATTCTGTAGTGGAGGCTATAAGTTTGGAAATGAAGCAACAAGAGCTCGATGGCAGATGCATCCAGATAAGAAACCTTCATAAAGTTTATGATACAAAGATGGGGAAATTTTGTGCTGTGGACTCTTTACAACTTACCCTCTATGAAAACCAGATTCTAGCGCTTTTAGGGCATAATGGAGCTGGGAAGAGTACGACAATATCCATGCTTGTAGGTCTTTCTCCCCCTACTGCTGGGGATGCTCTTGTGCTTGGCAAGAATATCATAACAGATATGGAAGAGATACGGAAAGGGCTGGGTGTGTGTCCCCAAAATGATATTCTCTTCCCAGAGTTGACTGTACGAGAACATTTGGAAATATTTGCCACATTGAAAGGAGTAAAAGAAGATTTTTTGGAAAGGACTGTCGTTGATATGATTAATGAGGTTGGCCTAGCTGATAAAATTAACACTCCTGTGAATGCTCTTTCTGGTGGCATGAAGCGGAAACTATCCCTAGGAATTGCGTTGATAGGGGACAGCAAGGTTATCGTGCTTGATGAGCCTACAAGTGGAATGGATCCATATTCTATGCGCTTGACATGGCAATTAATTAAAAAGATAAAAAAAGGTAGGATCATATTGCTAACAACACACTCGATGGATGAAGCTGATGAACTGGGAGATCGGATAGCCATTATGGCTAATGGATCTTTGAAATGTTGTGGAAGTTCTCTTTTCTTAAAGCATCAGTATGGAGTCGGTTATACTCTTACTCTAGTGAAGTCTGCACCTACTGTCTCTGTTGCTGCAGATATCATCTATCGTCACATTCCATCAGCAGTTTGTGTGAGTGAGGTTGGGACCGAGATCTCCTTTAAGCTTCCTATATCATCCTCTTCTTCATTTGAGAGCATGTTTCGGGAAATTGAAAATTACATGCGAAGATCAGTTTCTAATTCTGCAATTAATTGTTCTTTGGAGACTAGTACTGATGTTGAAAAAGACCATCTTGGAATTGATAGTTACGGTATATCTGTTACCACTCTTGAGGAAGTATTCCTAAGAGTTGCTGGATGTGATTTGGACGTTGCACCCTGTGAGCAGAAAAAGAGCTCTCTCCTTACAGGTTCTGTTGTTACAGATATTTCTGTTCATCACGTGCCTAGCAAAATCTCTGAGTCTCAGCATTTTGGGAAATCTGAAAAGTCTGGGTTCTTGGCTCTTGCAGTAAAAAGAGCGTGCGGTTTGATATTTTCAACAGTTTTCAGTATTATTAACTTTCTGAGTTTAGGGTGCTGTGGGTGTGATTTGCTATGGAGATCAAAGTTCTGGCAACATACAAAAGCATTATTTATTAAGAGGGCCATAACTGCTCGTAGAGACCGCAGGACAGTTGTATTCCAACTTTTGATTCCTGTTCTGTTCTTGTTTGTTGGTCTTCTCTTTCTTAAACTCAAGCCACATCCAGACCAGCAGTCGGTGACTTTGACAACTTCAGAATTTAATCCAGAATTAATTGGTGGTGGTGGTGGTGGTCCAATTCCTTTTGATCTGCAGTGGCATATTTCCAAGCAGGTTGCACATTATATTGAAGGTGGTTGGATTCAAAAATATAAACCTAGTGCTTATAAGTTTCCTGATGCTGAAAAAGCATTGTCCAATGCAATAGAAGCAGCAGGAGAAACTCTTGGACCAACTCTACTATCCATGAGCGAATATCTGATGTCTAGCTTCAACGAATCCTACCAATCAAGGTATGGAGCGATTGTAATGGATGATCAGAATAGTGATGGCAGTATAGGATATACAGTTCTGCACAATTGTTCTTGTCAGCATTCTGCTCCAACCTTTATCAATATAGTGGATGCTGCAGTTCTGAGGCTTGCTACTGGTGACCAGAATATGACTATTCAAACACGAAATCACCCTCTCCCCATGACAAAAAGCCAGCGCTTGCAACGACATGATCTGGATGCTTTTGCTGCTGCTATCATCATTAATATAGCATTCAGTTTTATTCCTGCATCGTTTGCTGTCTCTCTTGTGAAGGAACGTGAAACAAAAGCTAAACATCAGCAAATGATCAGTGGGGTTTCGATGCTTTCATACTGGATATCTACTTACCTATGGGATGCTATCAGTTTCTTGGTTCCTACTTGTTTAGCACTTGTACTCTTTTACATCTTTGGTATGGATCAATTCATTGGTAAAGGTAGATTTCTTGCAACGGCTATTATATTTTTGGAATACGGACTGGCCATTGCATCATCAACATATTGCCTTACATTTTTCTTTTTGGACCATACTGTGGCTCAGAATGTGGTTTTGTCGGTCCACTTTTTCACTGGACTTATTCTTATGGTTATTTCATTCATTATGGGGCTTATTGAAACCATGGCGAAAACAAATTCTTTTCTTAAGAATTTCTTCAGAATATCACCTGGGTTTTGTTTTGCTGATGGACTTGCCTCATTGGCTCTTCTTCGGCAGGGGATGAAAGATAAAACAAGTGATGGGGTTTATGATTGGAATGTTACCGGTGCCTCAATTTGTTATCTCGGTATACAGTTTATGTGTTACTTTCTCTTAACTCTTGGTCTCGAACTGTTGCCTCTCCATAAATTGACTGCAATTACAGTCAAGGAATGGTGGATGAAGTGTTGGAGGAACAATCTCAGAAATCTTAAAGCTGAAACTTCATCTCCCAGCTTGGAACCTTTTCTTGCACCTTCTTCAGAGTATGTTATTCCTGACTTTGATCTCGATGTAGACGTCGCAGCAGAAAGAAATAGGGTCCTATCAGGCTCCATCGACAATGCCATTATCTACTTAAGTAATCTTCGGAAGGTATATCCTGGAGAAAATTATCTCCACAAGAAAATTGCGGTGGATTCTTTAACTTTTTCAGTTCAAGAGGGAGAATGCTTTGGGTTTTTAGGCACAAATGGTGCTGGGAAGACAACAACTCTGTCAATGCTTACTGGAGAAGAATCTCCCAGCGAGGGAACTGCTTTCATTTTTGGAAAAGATATACGAACCGATCCTAAGGCTGCTCGTTGTGATATTGGATATTGCCCACAGTTTGATGCTCTATTAGAGTTCCTTACAGCAAAGGAACACCTAGAACTTTATGCTAGAATAAAAGGTGTTCCAGAGTTGAAGATAGATGATGTCGTTATGGAAAAATTGGTGGACTTTGACTTGCTGAAGCATGCCAATAAACCATCTTATTCACTCAGTGGTGGAAACAAACGTAAACTCTCCGTTGCAATTGCAATGATTGGAGAACCACCTGTCGTTATTCTTGATGAGCCATCCACAGGGATGGATCCTATTGCCAAACGATTCATGTGGGATGTTATATCCCGAATATCTACCAGGAGAGGAAAGACAGCTGTTATCCTCACCACACATAGCATGAATGAAGCGCAAGCACTTTGCACTCGTATTGGGATAATGGTTGGAGGACGGCTACGCTGCATAGGAAGTCCCCAACACTTGAAAACACGATTTGGAAATCATCTTGAGCTAGAGGTCAAACCTCATGAAATCCACTCAGAGGACCTGTATAACTTTTGCCAACATATTCGTGAGGGGTTTTTTGATTTTCCTTCACACCCGAGAAGTTTATTGAATGACATTGAAGTTTGTATCGGAGCTATTGAACCCATCACGCCAGAAAACCAATCAGTGTCAGAGATTACTTTGTCTAGGCAAATGTTAACCATAATCGGACGTTGGCTTGGAAATGAAGAAAGGATAAAAACACTTGTATCCTCGTCTACCACTCCTGGAGTTTTTGATGAACAATTAACAGAGCAATTGTTTCGAGATGGCAGCTTACCGTTGCCTATATTTTCTGAGTGGTGGTTAGCAACAGAGAAGTTCTCGGAGATTAACTCGTTTATTCTCTCTTCATTTTCGGGTGCAACATTCCATGGGTGCAATGGATTAAGTATGAAATATCAGTTGCCTTATGGGGAGGATGGCCTCTCGCTTGCAGATGCTTTTGGACACATAGAGAGAAACCGAAAGCAGCTTGGAATTGCCGAATACAGTCTCAGCCAATCGACGTTAGAAACGATTTTTAATCATTTTGCATCGAATTCTTAA 5697 40.57 MGPAWRQLKVMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIQKGMFVEVGKGISPSFQEVLVSLKKNGEYLAFAPDTVETKTMLHLMSLKFPLLEVVTRVYKDEQELEAYIRSDLYGSCNELELFKSQNKGAVVFHEQGPQLFDYSIRLNHTWAFSGFPNVRSIMDMNGPYLNDLELGATNIPTMQYSFSGFLTLQQVMDSFIIFASREMETNILHVNSKHTLSNFSSRTSLPNMPWTQFSPSKIRIAPFPTREYVDDEFQSIVKKVMGVLYLLGFLYPISRLISYYAFEKEEKIKEGLYMMGLKDWIFHLSWFISYAVQFSISAGIITFCTMHNLFKYSDKTVVFIYFFSFGLSAIMFSFLISTFFKRAKTAVAVGTLSFLGAYFPYYTVNDETVSMIVKTTASLFSPTAFALGSINFADYERARVGLRWSNLWRASSGVNFLVCLLMMFFDALLYCAIGLYMDKVLSRENGLGCSWSCFLRNFFSKKRTIVENQTPVECKIADAEIANASRNDVFDSVVEAISLEMKQQELDGRCIQIRNLHKVYDTKMGKFCAVDSLQLTLYENQILALLGHNGAGKSTTISMLVGLSPPTAGDALVLGKNIITDMEEIRKGLGVCPQNDILFPELTVREHLEIFATLKGVKEDFLERTVVDMINEVGLADKINTPVNALSGGMKRKLSLGIALIGDSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPTVSVAADIIYRHIPSAVCVSEVGTEISFKLPISSSSSFESMFREIENYMRRSVSNSAINCSLETSTDVEKDHLGIDSYGISVTTLEEVFLRVAGCDLDVAPCEQKKSSLLTGSVVTDISVHHVPSKISESQHFGKSEKSGFLALAVKRACGLIFSTVFSIINFLSLGCCGCDLLWRSKFWQHTKALFIKRAITARRDRRTVVFQLLIPVLFLFVGLLFLKLKPHPDQQSVTLTTSEFNPELIGGGGGGPIPFDLQWHISKQVAHYIEGGWIQKYKPSAYKFPDAEKALSNAIEAAGETLGPTLLSMSEYLMSSFNESYQSRYGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAVLRLATGDQNMTIQTRNHPLPMTKSQRLQRHDLDAFAAAIIINIAFSFIPASFAVSLVKERETKAKHQQMISGVSMLSYWISTYLWDAISFLVPTCLALVLFYIFGMDQFIGKGRFLATAIIFLEYGLAIASSTYCLTFFFLDHTVAQNVVLSVHFFTGLILMVISFIMGLIETMAKTNSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVYDWNVTGASICYLGIQFMCYFLLTLGLELLPLHKLTAITVKEWWMKCWRNNLRNLKAETSSPSLEPFLAPSSEYVIPDFDLDVDVAAERNRVLSGSIDNAIIYLSNLRKVYPGENYLHKKIAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLTGEESPSEGTAFIFGKDIRTDPKAARCDIGYCPQFDALLEFLTAKEHLELYARIKGVPELKIDDVVMEKLVDFDLLKHANKPSYSLSGGNKRKLSVAIAMIGEPPVVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPHEIHSEDLYNFCQHIREGFFDFPSHPRSLLNDIEVCIGAIEPITPENQSVSEITLSRQMLTIIGRWLGNEERIKTLVSSSTTPGVFDEQLTEQLFRDGSLPLPIFSEWWLATEKFSEINSFILSSFSGATFHGCNGLSMKYQLPYGEDGLSLADAFGHIERNRKQLGIAEYSLSQSTLETIFNHFASNS 1898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9210857 9278664 - PI0007357.1 Cmetu08g1425 364236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1425 1898 SMART AAA_5 583 765 IPR003593 GO:0016887
Cmetu08g1425 1898 SMART AAA_5 1500 1687 IPR003593 GO:0016887
Cmetu08g1425 1898 CDD ABC_subfamily_A 555 776 - -
Cmetu08g1425 1898 ProSitePatterns ABC transporters family signature. 690 704 IPR017871 GO:0005524|GO:0016887
Cmetu08g1425 1898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1469 1699 IPR027417 -
Cmetu08g1425 1898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 770 IPR027417 -
Cmetu08g1425 1898 ProSitePatterns ABC transporters family signature. 1607 1621 IPR017871 GO:0005524|GO:0016887
Cmetu08g1425 1898 CDD ABC_subfamily_A 1470 1696 - -
Cmetu08g1425 1898 Gene3D - 542 791 IPR027417 -
Cmetu08g1425 1898 Gene3D - 1462 1712 IPR027417 -
Cmetu08g1425 1898 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 985 1396 IPR026082 GO:0016020|GO:0055085|GO:0140359
Cmetu08g1425 1898 Pfam ABC-2 family transporter protein 991 1393 IPR013525 GO:0016020|GO:0140359
Cmetu08g1425 1898 Pfam ABC-2 family transporter protein 241 479 IPR013525 GO:0016020|GO:0140359
Cmetu08g1425 1898 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1470 1708 IPR003439 GO:0005524
Cmetu08g1425 1898 FunFam ABC transporter A family member 1 1459 1713 - -
Cmetu08g1425 1898 FunFam ATP-binding cassette sub-family A member 12 547 792 - -
Cmetu08g1425 1898 Pfam ABC transporter 575 718 IPR003439 GO:0005524
Cmetu08g1425 1898 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 555 788 IPR003439 GO:0005524
Cmetu08g1425 1898 Pfam ABC transporter 1492 1634 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1425 K05643 - - csv:101206409 3605.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1068 Cmetu-Chr2:23789989 Cmetu08g1425 Cmetu-Chr8:9210857 1.90E-66 dispersed
Cmetu08g1425 Cmetu-Chr8:9210857 Cmetu12g0381 Cmetu-Chr12:2033366 4.30E-62 dispersed
Cmetu02g0426 Cmetu-Chr2:9964598 Cmetu08g1425 Cmetu-Chr8:9210857 1.20E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003368 1 3 1 1 1 3 2 3 2 3 1 1 1 0 1 1 3 1 2 3 1 1 1 4 2 1 1 1 0 1 47