Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1522 ATGAGGGAAGAACACTCGAATTGGTTTTCTAGATGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCGTCTCCGCCGCTTTCAAATCCTCTCCCTGGTTCCGGCAACGGAATTGTGCCGCCAAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACTCTCAAGCGGCCGCGCCTTGTTTGGACGCCTCAACTTCACAAGCGATTTGTTGATGCTGTTGCTCATTTGGGGATAAAAAATGCTGTCCCCAAGACCATAATGCAGCTCATGAGTGTTGATGGGTTGACTAGAGAGAACGTAGCTAGTCATTTGCAGAAGTACCGCCTCTATCTAAAGCGGATGCAGGGCTTGTCCGGTGGCGGTGGCGGCGCAGGTGCTGCCTTGGTTGGTTCATCCGATCCCGCCACTGACCATTTGTTTGCTAGCTCACCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGCTCAGAGCATTACTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCATCACCATCATCAGCAGCAGATGGCTGCTGCTGCTGCTGTCGCCGGCCATACGCAGCTCCAGCCGCCGTATCATCGGCAGGTTGGACATTTTGGGTCGCCGCCAAATGGTCAGTTTGAGCACCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAACATCAGTGCATAATTCTGTTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCACTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 906 52.65 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIVPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGAGAALVGSSDPATDHLFASSPVPPHLLHSARTSSEHYLPFVPMATLQQHHHHQQQMAAAAAVAGHTQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGTSVHNSVPNYIEDLESANATGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6644500 6645405 + PI0000460.1 Cmetu08g1522 364333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1522 301 FunFam Two-component response regulator 93 156 - -
Cmetu08g1522 301 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cmetu08g1522 301 MobiDBLite consensus disorder prediction 1 91 - -
Cmetu08g1522 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cmetu08g1522 301 Gene3D - 94 156 - -
Cmetu08g1522 301 MobiDBLite consensus disorder prediction 1 18 - -
Cmetu08g1522 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Cmetu08g1522 301 MobiDBLite consensus disorder prediction 46 60 - -
Cmetu08g1522 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cmetu08g1522 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 258 IPR044841 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1522 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g1522 Cmetu-Chr8:6644500 Cmetu12g0038 Cmetu-Chr12:23792238 2.90E-37 dispersed
Cmetu04g2442 Cmetu-Chr4:7337949 Cmetu08g1522 Cmetu-Chr8:6644500 8.80E-105 transposed
Cmetu02g0350 Cmetu-Chr2:17727351 Cmetu08g1522 Cmetu-Chr8:6644500 1.80E-11 wgd
Cmetu03g2101 Cmetu-Chr3:16387252 Cmetu08g1522 Cmetu-Chr8:6644500 5.70E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8424 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cmetu TF