Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1543 ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGACGATGATGAGGCGTTTGAGAGGCATGAAGAGGTGTATATAGCTCCAGAGGAACATATAGTGACTGGTGTCAGTATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAGAGAGATCGCTCTCTTGAGAGACCGGTGCATGAATACCAACAACCTGCACGGGATCAGTTTTACCCTTCTAAAAACCAAAAATCTGATAGAAACAGGCTTCCTCCAGGTTGGCTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGGATGATTCCTTCCAAGGTTCCTTTGGGGGAATCCTTCAATGATTGTATAGCACCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAGCAGAGGGTTTGGGGAAGAAAACTCGGTTTGGTGATTGATTTGACAAATTCTTATCGTTATTATACAACATCAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATACGTTCGTTTACGAGGTCATTCAGTTCATTTCTCGTCAGAAACAACAATCGAAGAAGTATATTCTTGTCCATTGTACACATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGTGCGTGCACTATCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCTGATGCACGCCCTCCTGGAATTTACAAGCCAGACTACGTTGATGCATTATATACCTTTTACCATGAAAGAAAACCTGATGCAGTTGTTTGCCCAGCCACACCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAACGGCGAAGCAGTTCCAGATGATGACGATGATGGAGGTCCTGCTGCTCCTTTGAATGAAAATCATGATGATGGTGCTCAAGTGATGACAAACGATGATATTTTGGGTGATGAGATACCTGAAGACCAAGAACGTGGTTTGAAACAATTTTGCTATCAAATGCTTAAATTGAATCCTGGAGCAAGAGCAAATTTGCAATTTCCAGGGTCGCATCCAGTGTCTCTGAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACAAGATATATGATGCTAATTACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTAGAAGAGTCCAAATGAGATTTCCAATGATAATTGATACTATGCCAGACTCGCAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGGCGATTAATTATGTTTCGGTCATTGAGCGTCCTTTCTACGAACGGTGGAAGATGCTTGAAAAAGAAGTGATTGAACCTCGCAATTTTGAGCGCCAGAATATTTATCAAAGCAGAAACCCGCATTATAGATATGACCTAGAGCCATTCAGGGTTTTTACCAAACTTTTGAAGGAGTTCATACCGAGGCTTTCTCATGATGCCGATGGTCTAATATTTCAGGGGTGGGACGATGCTTATGTTCCTCGAACACACGAGGGTCTTTTAAAGTGGAAATATCCGGAAATGAACTCAGTCGACTTCCTATTTGAGTTGGGTGAAGATGATTCTCAGGTTCTTATTTTGTTTGAACGAGGAAAGAGGAAGACCATGGAAGGAAATAGGGTTAAGTTCAAAGATGGCGATCCCTCCTTTTATTCAGGAAAGATTGTCGAGTGCTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATCCGGACAGACAAAACAACTCCAAATGATTTCAATACTTATAAAAAGGTTATGCGGAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTGCCCATGTATGCAGATAGGATAAGGAATGATAGTAAAGCGGCTCAACATACGAATTCAACACGACGGAGGTGA 1956 41.46 MIVSMDLNASPVPEDDDEAFERHEEVYIAPEEHIVTGVSIARREREERKRRLKRDRSLERPVHEYQQPARDQFYPSKNQKSDRNRLPPGWLDCPAFGQEICWMIPSKVPLGESFNDCIAPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSYRYYTTSDLNKEGIKYVKIPCKGRDSVPDNKSVNTFVYEVIQFISRQKQQSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFSDARPPGIYKPDYVDALYTFYHERKPDAVVCPATPEWKRSSDLDLNGEAVPDDDDDGGPAAPLNENHDDGAQVMTNDDILGDEIPEDQERGLKQFCYQMLKLNPGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPMIIDTMPDSQKQERRYLIYDMMAINYVSVIERPFYERWKMLEKEVIEPRNFERQNIYQSRNPHYRYDLEPFRVFTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFELGEDDSQVLILFERGKRKTMEGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15350162 15360992 - PI0002768.1 Cmetu08g1543 364354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1543 651 FunFam mRNA capping enzyme family protein 520 628 - -
Cmetu08g1543 651 FunFam mRNA capping enzyme family protein 82 297 - -
Cmetu08g1543 651 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 253 IPR000387 GO:0016311|GO:0016791
Cmetu08g1543 651 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Cmetu08g1543 651 Gene3D DNA ligase/mRNA capping enzyme 313 519 - -
Cmetu08g1543 651 PIRSF mRNA_capping_HCE 74 651 IPR017074 GO:0004484|GO:0006370|GO:0140818
Cmetu08g1543 651 CDD Adenylation_mRNA_capping 325 522 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cmetu08g1543 651 MobiDBLite consensus disorder prediction 43 66 - -
Cmetu08g1543 651 MobiDBLite consensus disorder prediction 279 310 - -
Cmetu08g1543 651 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 315 522 - -
Cmetu08g1543 651 Gene3D - 520 628 IPR012340 -
Cmetu08g1543 651 SUPERFAMILY Nucleic acid-binding proteins 524 636 IPR012340 -
Cmetu08g1543 651 MobiDBLite consensus disorder prediction 43 85 - -
Cmetu08g1543 651 Pfam Dual specificity phosphatase, catalytic domain 138 259 IPR000340 GO:0008138|GO:0016311
Cmetu08g1543 651 Gene3D Protein tyrosine phosphatase superfamily 82 295 IPR029021 -
Cmetu08g1543 651 CDD RNA_5'-triphosphatase 89 256 - -
Cmetu08g1543 651 PANTHER MRNA-CAPPING ENZYME 81 633 - -
Cmetu08g1543 651 SMART dsp_5 18 261 IPR020422 GO:0006470|GO:0008138
Cmetu08g1543 651 ProSiteProfiles Dual specificity protein phosphatase domain profile. 108 265 IPR020422 GO:0006470|GO:0008138
Cmetu08g1543 651 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 276 IPR029021 -
Cmetu08g1543 651 Pfam mRNA capping enzyme, C-terminal domain 525 619 IPR013846 -
Cmetu08g1543 651 Pfam mRNA capping enzyme, catalytic domain 409 521 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1543 K13917 - - csv:101209960 1280.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g852 . . . . . Bpe03g01015 . Bma10g00319 . . Cma03g00375 . Car03g00328 Car07g01025 Sed14g0660 Cpe10g00935 . Bhi03g02108 Tan03g0830 Cmetu08g1543 . Hepe04g0778 . . Cla04g00726 Cam04g0737 Cec04g0863 Cco04g0913 Clacu04g0781 Cmu04g0770 Cre04g0825 . . . . . Csa04g01589 Chy08g00661 . Blo07g01154 . . Bda05g00942 . . . . . Cmo03g00384 . . . . . . Cpe19g00296 . . . . . . . . . . . . . . . . . Cme08g02497
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33