Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1550 ATGGGTGCCCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAGGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTCACAGATCCTGAATTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCCAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCTGTGGCCATAAAACATCATGATAATCCTATGCCTGTAAGCACTGTGCTTCCAAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAAGTCGCTCTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACCTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCGTCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCACCAAATTCTCCCTTACCTGGAAGAAGAAATGCTCCATTGTTACTCCTTGAGGACAAGCAGACGGATTCTTCAAAAACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAACAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAATAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 927 43.15 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSVAIKHHDNPMPVSTVLPNEEIVDAKPLAISNGTSRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPSNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLPGRRNAPLLLLEDKQTDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFPNRSPIQKVLLQDNKTLQ 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20287145 20294232 - PI0011101.2 Cmetu08g1550 364361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1550 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cmetu08g1550 308 FunFam Telomere repeat-binding factor 1 2 58 - -
Cmetu08g1550 308 Gene3D - 118 191 IPR036388 -
Cmetu08g1550 308 FunFam Telomere repeat-binding factor 1 116 196 - -
Cmetu08g1550 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cmetu08g1550 308 CDD SANT_TRF 6 57 - -
Cmetu08g1550 308 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Cmetu08g1550 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmetu08g1550 308 Coils Coil 240 277 - -
Cmetu08g1550 308 SMART sant 4 59 IPR001005 -
Cmetu08g1550 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cmetu08g1550 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmetu08g1550 308 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Cmetu08g1550 308 SUPERFAMILY Winged helix DNA-binding domain 116 195 IPR036390 -
Cmetu08g1550 308 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmetu08g1550 308 Gene3D - 2 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1550 K09422 - - csv:101202913 511.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0068 Cmetu-Chr4:12021055 Cmetu08g1550 Cmetu-Chr8:20287145 3.10E-30 transposed
Cmetu07g0235 Cmetu-Chr7:367169 Cmetu08g1550 Cmetu-Chr8:20287145 2.20E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0235 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 60.5 7.4e-78 287.7
Cmetu08g1550 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.5 5.7e-62 235.0
Cmetu08g1550 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 4.2e-65 245.4
Cmetu08g1550 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 5.4e-57 218.4
Cmetu04g0068 . 1 278 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 1.4e-68 256.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8427 PF00538 Linker_histone 1.70E-11 CL0123 Cmetu TF