Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1604 ATGGCGGTTTCTCCCCACTCTTTCCCACCGCGTAAACGCCGCCCCTCCGCCGCCGCCTTCGTCTCCCCCAAACTCTCCGCCCCAATCCTCCTCCAATCCCTCCTCTCCCTCTCCCAAGAAATCTCTTCCACTAAACCCCTCAAATTCCTTCTCAACCGCTACTCCATTTCTATGATCCGCAAATCCTTATTACTCGAAATTATCCTCCACGACCTCCTCCGCCGTCACCCCATTCTCTCCCTCTCCCCCTCCGCTTCCCTCTGTCTCGAAGAAATGTACATCGTTTTACAAAGAATCAAAACCCTGCTCGAAGATTGTTCTAACGGAAGCAAGATCTGGCTACTCACTCAAAACCAATCCATCGCCAACAATTTCCACGAACTCACTTTGGATTTATCCACTCTACTCGATATCTTCCCTGTTAAAGACGCTGGTTTAACCGAAGACGTTGAAGAATTGTTTTACCTCTTGAGAAATCAAACCTCTGAATCCAACGTGTTCCTCGATCCAAGAGATGAAGCTCTCCGATTCAGAGTATTGAAGATGATCGATCGAATCAAAGACGAAATTGTTCCGGATTATTCCGAATTGTTAGAGATTTTTACCATGATTGATATTCGTGATTCTTCTAGCTGTAGAGAGGAAATCGAGAATCTCGAGGATGAAATTCAGAATCAAACCGAAGAGAAATCGAGATCTGATGTGATTGCTTTGATCGGGTTAGTTCGTTACGCGAAATGCGTTTTGTATGGAGCGTCGACGACGGCGGAATACGGTTTCCAACGGAAAGATTCGATCTCCGATTTGGCTGTACCGGCGGATTTCAGGTGTCCGATTAGTTTGGATTTAATGCAAGACCCGGTTGTCGTGGCAACAGGACATACGTACGATCGTGCGGCGATTACGCTTTGGATTGAATCTGACTCTGGCCCACACGAACCTAATACCGAACCGGGCATTGAAAATTTGATTGCGATGTGGTGCCGTCAGGAAAGAATTCCGTTTGATGTAACGGAAAGTAATAAGGACAGAGTCAACGACGTTACGTTAAATAAAGCGGCGTTAGAAGCTATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGTTGACTCTTCTGTGAACGACGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGAGTCCGGCAGCCGTGGATATATCGCTCAAGCCGGAGCTCTACCGTTACTCGTCCGATATCTCAACTCCGATAACCCAATTCTCCAAGTGAACGCCGTCACCACGGTGCTCAACCTCTCGATTTTTGAATCGAACAAGTCGTTGATAATGGAGACCGACGGTGCGTTGATCGGAGTTATCGAGGTACTCCGGTCCGGCGCGACTTGGGAAGCGAAAGGAAACGCCGCCGCCACAATATTCAGCCTCTCCAGTATCCATTCTTACAGGCGTAGATTGGGGAGGAAGACACGTGTCATAAGGGGACTGCTTGATTTGGCGAAAGACGGGCCGATTAGTTCGAAGAGGGATGCTCTGGTTACGATCTTGACATTAGCCGGCGACAGGGAGACGGTCGGGAGGTTAATCGAAGGTGGGGTTATGGAGACGGTGAGTTATTTGATGAACAGCTTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGAAATTGGGGGTTGTGTTGAGAGAGGGCTCCGATAGGGCCAGAGAGAGCGCTGCGGCGGCCCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATGGTGACGGAGTTGGCGTCGATGGCCGGAATTGAGAGAGTCATTTGGGAATTGATGGGGAGTGGGACAATGAGAGGGCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGGAAACGGCGGCACGGGAGGAGATTCGATGACGGTTACATCGTCGAGAATCGGCGGCGAGTCAACCACATTTGTTAGTTCGTCAAGAGGAGCAATTGTGCATAGCTAG 1989 50.18 MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLQSLLSLSQEISSTKPLKFLLNRYSISMIRKSLLLEIILHDLLRRHPILSLSPSASLCLEEMYIVLQRIKTLLEDCSNGSKIWLLTQNQSIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFYLLRNQTSESNVFLDPRDEALRFRVLKMIDRIKDEIVPDYSELLEIFTMIDIRDSSSCREEIENLEDEIQNQTEEKSRSDVIALIGLVRYAKCVLYGASTTAEYGFQRKDSISDLAVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESDSGPHEPNTEPGIENLIAMWCRQERIPFDVTESNKDRVNDVTLNKAALEAMRMTATFLVNKLATSVDSSVNDVVYELRVLAKTESGSRGYIAQAGALPLLVRYLNSDNPILQVNAVTTVLNLSIFESNKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPISSKRDALVTILTLAGDRETVGRLIEGGVMETVSYLMNSLPEEAVTILEVVKLGVVLREGSDRARESAAAALVTMCRQGGSEMVTELASMAGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDGNGGTGGDSMTVTSSRIGGESTTFVSSSRGAIVHS 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14427473 14429540 - PI0004451.1 Cmetu08g1604 364415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1604 662 PANTHER U BOX DOMAIN-CONTAINING 67 620 - -
Cmetu08g1604 662 SMART Ubox_2 274 327 IPR003613 GO:0004842|GO:0016567
Cmetu08g1604 662 Coils Coil 209 236 - -
Cmetu08g1604 662 CDD RING-Ubox_PUB 272 307 IPR045210 -
Cmetu08g1604 662 Gene3D - 60 141 IPR036537 GO:0007166
Cmetu08g1604 662 SUPERFAMILY RING/U-box 262 331 - -
Cmetu08g1604 662 SUPERFAMILY ARM repeat 364 619 IPR016024 -
Cmetu08g1604 662 ProSiteProfiles U-box domain profile. 270 312 IPR003613 GO:0004842|GO:0016567
Cmetu08g1604 662 Pfam U-box domain 271 316 IPR003613 GO:0004842|GO:0016567
Cmetu08g1604 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 402 444 IPR000225 GO:0005515
Cmetu08g1604 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 323 IPR013083 -
Cmetu08g1604 662 Pfam Armadillo/beta-catenin-like repeat 395 430 IPR000225 GO:0005515
Cmetu08g1604 662 Gene3D - 362 627 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1604 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g1604 Cmetu-Chr8:14427473 Cmetu12g0270 Cmetu-Chr12:2369868 4.20E-65 dispersed
Cmetu08g1604 Cmetu-Chr8:14427473 Cmetu12g0678 Cmetu-Chr12:5805784 1.10E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g376 Blo01g01030 . Bda01g00060 . . . . . . . Cma03g00299 Cma07g01227 Car03g00261 Car07g01182 Sed14g0585 Cpe10g00996 . Bhi03g02213 Tan03g0722 Cmetu08g1604 . Hepe04g0691 . . Cla04g00653 Cam04g0651 Cec04g0772 Cco04g0823 Clacu04g0698 Cmu04g0693 Cre04g0745 . Cone10ag0439 . . Lsi01g01607 Csa04g01681 Chy08g00584 . . . . . . . Bma01g01714 . . Cmo03g00311 Cmo07g01269 . . . . . Cpe19g00149 . . . . . . . . . . . . . . . . . Cme08g02117
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009140 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 0 2 1 1 33