Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1841 ATGGGGAGAGTTAAATTGCAAATCAAGAGAATTGAAAATACAACAAATCGGCAAGTAACTTTTTCAAAACGAAGAAATGGACTCATCAAGAAGGCTTATGAACTCTCTATTCTATGTGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTATATAAATCTGCCTGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTATTAGGAACGCTAAATAATTTGAAGACAGAGAATGATATTGCACAACAACTTTCCAATCCTACATCAAGCAACTCCAATGTTGAGGAACTTCAACAAGAGGTTGGTACATTGAGACACGAGCTCCAACTTGCCGAGCAACAACTCAGGTTATTCGAACCCGATTTTCTTTCATTCACATCAAATGCTGAAATAAATTCTTGTGAGAAAAACCTTTTAGACACTTTGGCACGAATCACCCAAAGGAAGAAAGATGTATTAAGCAGTCATTTATCTCCTTATGAACCTCCAAATGGGATTCAGATATATTTGGATCAACAAGATGGAATACCAAACTCTTTTGAAAGTGATGTTGGTAATTGGTTGCCAGAAAATAATGGACAAAATCATCCAAACCAAATTTGTGTTGCATCTGAATCATCTTCCATTCCTCAAAGTGGGCAGTATCCAACAACGACAGTATATGATCAAGTAGTCTCACAAGCAGCAGCAACAAATATAAATGTTGGTGTTGGTGTTGGTGTTGGTGGCTATGACATTGCAAATCCCAACGATGACGGTTTCTCTCCATGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCTCAAACTTCTTTTGATGTTGTCAAGGATGAAATTGGAGAGGCTTGTATGAATACAATGATACCACAACAACAAGTTGATAGCATTTCAAATGGAAACCAAATGCCTCCAAGTGATGGAAGTGCCAATTATGATAATTGCAAGTTGTCTCAACTCAATGTGGATTAA 1044 38.7 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIAQQLSNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDFLSFTSNAEINSCEKNLLDTLARITQRKKDVLSSHLSPYEPPNGIQIYLDQQDGIPNSFESDVGNWLPENNGQNHPNQICVASESSSIPQSGQYPTTTVYDQVVSQAAATNINVGVGVGVGGYDIANPNDDGFSPWHHNYTTTQLLSSFIPQTSFDVVKDEIGEACMNTMIPQQQVDSISNGNQMPPSDGSANYDNCKLSQLNVD 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12407235 12415035 + PI0000240.1 Cmetu08g1841 364652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1841 347 Coils Coil 115 135 - -
Cmetu08g1841 347 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Cmetu08g1841 347 MobiDBLite consensus disorder prediction 319 339 - -
Cmetu08g1841 347 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmetu08g1841 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmetu08g1841 347 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmetu08g1841 347 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 207 - -
Cmetu08g1841 347 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Cmetu08g1841 347 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmetu08g1841 347 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmetu08g1841 347 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmetu08g1841 347 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmetu08g1841 347 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Cmetu08g1841 347 FunFam MADS-box transcription factor 41 13 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1841 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0507 Cmetu-Chr7:3942143 Cmetu08g1841 Cmetu-Chr8:12407235 7.50E-112 dispersed
Cmetu08g1841 Cmetu-Chr8:12407235 Cmetu09g1492 Cmetu-Chr9:21629856 9.60E-21 dispersed
Cmetu08g1841 Cmetu-Chr8:12407235 Cmetu12g1892 Cmetu-Chr12:516900 1.30E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0995 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 1.5e-37 153.7
Cmetu07g0995 . 1 205 Type I MADS-box Gene Family AT5G60440 51.4 3.8e-50 195.7
Cmetu08g1841 . 1 174 Type I MADS-box Gene Family AT1G77950 58.8 2.2e-51 199.5
Cmetu02g1958 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 5.2e-53 205.3
Cmetu12g0158 . 1 178 Type I MADS-box Gene Family AT5G48670 51.4 3.6e-46 182.6
Cmetu07g0995 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 1.5e-37 153.7
Cmetu07g0995 . 1 205 Type I MADS-box Gene Family AT5G60440 51.4 3.8e-50 195.7
Cmetu08g1841 . 1 174 Type I MADS-box Gene Family AT1G77950 58.8 2.2e-51 199.5
Cmetu02g1958 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 5.2e-53 205.3
Cmetu12g0158 . 1 178 Type I MADS-box Gene Family AT5G48670 51.4 3.6e-46 182.6
Cmetu07g0995 . 1 205 Type I MADS-box Gene Family AT5G60440 51.4 3.8e-50 195.7
Cmetu02g1958 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 5.2e-53 205.3
Cmetu12g0158 . 1 178 Type I MADS-box Gene Family AT5G48670 51.4 3.6e-46 182.6
Cmetu07g0995 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 1.5e-37 153.7
Cmetu08g1841 . 1 174 Type I MADS-box Gene Family AT1G77950 58.8 2.2e-51 199.5
Cmetu07g0995 . 1 205 Type I MADS-box Gene Family AT5G60440 51.4 3.8e-50 195.7
Cmetu02g1958 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 5.2e-53 205.3
Cmetu12g0158 . 1 178 Type I MADS-box Gene Family AT5G48670 51.4 3.6e-46 182.6
Cmetu07g0995 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 1.5e-37 153.7
Cmetu08g1841 . 1 174 Type I MADS-box Gene Family AT1G77950 58.8 2.2e-51 199.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8446 PF00319 SRF-TF 1.10E-25 No_clan Cmetu TF