Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1910 ATGAACAACATGAACATAAGCTCCATCAAAACTGCCTCCAATGGCATATGGCAAGGTGATAATCCTCTCCATTTCGCCTTCCCTCTCTTAATCCTTCAATCCGTTCTCATCCTCGTTCTCACTCGCTTCCTCGCCCTCCTCCTCAAACCCCTTCGTCAACCCAAAGTCATCGCCGAAATCGTCGGTGGGATTCTACTGGGTCCATCCGCTTTCGGACGTAACAAAACTTATTTAAACCACATTTTCCCCTCATGGAGTACTCCCATTCTCGAATCAGTCGCCAGTATTGGTTTGTTGTTCTTCCTCTTCCTCGTTGGACTCGAACTCGATTTGTCCTCCATTCGTCGCAGTGGTAAACGAGCATTCGGAATTGCTCTAGCGGGAATCTCCGTCCCATTCTTTTCTGGCATAGGTGTTGCCTTCGTCCTGCGTAAAACCGTCGATGGCGCTGACAAAGTTGGTTACGGTCAGTTCATTGTATTCATGGGTGTCGCTCTATCCATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCAGAGCTAAAACTCCTCACTACCCAAGTCGGCGAAACCGCTATGGCCGCCGCCGCATTCAACGACGTAGCCGCTTGGATCCTCCTCGCACTTGCCGTTGCCTTAGCCGGCAACGGCGGCGAAGGCGGATCCGAGAAGAGTCCATTGGTTTCTGTGTGGGTGTTACTTTCAGGAGCCGGGTTTGTGGTTTTCATGATGGTGGTCACTCGGCCCGGAATGAAATGGGTGGCGCGTCGATGCACGTACGAGCACGACGCCGTGGACGAGGCGTATATCTGTTTGACGTTGGTGGGGGTTTTGGTTTCGGGATTTGTGACGGATTTGATCGGAATTCATTCCATTTTTGGGGGATTTATATTTGGATTGACGATTCCAAAAGGGGGAAGATTTGCAGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCAAGTGGATTAAAGACGGATGTGGCCAAAATTAAAGGGGGAAAAGCTTGGGGGTTGTTGGCGCTGGTTATATCGACGGCGTGCGCCGGTAAGATTCTGGCGACTTTTGTGGCGGCGATGGTGTTTTTGATCCCGGCGAGGGAGGCGCTGGCGTTGGGTGTGCTTATGAATACCAAGGGCTTGGTTGAACTCATTGTGCTCAATATTGGGAAGGAGAAAAAGGTTTTAAACGACGAAGTGTTCGCCATATTAGTGTTAATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCAGTTTACAAGCCAGCCCGTGGTGGCTCCACCCCACCTACCCACCGTAAACTCCGAGACCTCTCCGCCAATGACTCCCCCGTCGACGACGAGCTCCGAATCCTCGCTTGCGTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACACTGACCGAGTCAACTCGCAGCACCAAAAATTCCTCCCTCAAACTCTTCGTAATGCACTTGGTCGAACTCACCGAGCGATCCTCTTCCATCATGATGGTCCAACGCGCCCGCAAAAACGGCTTCCCTTTCTTCGCCCGGTTCCGCAAGGCCAGCGAGTGGCGAGACCAAATGGCTGCGGCCTTTCAGGCCTATAGCCAATTGGGCCGAGTCAAAGTCCGGCCCACTACGGCTGTCTCTTCCTTAGCCACTATGCATGAGGATATCTGCCACGTCGCGGATGATAAGAGGGTTACAATGATTATCTTGCCGTTTCATCGGAATTGGAGGGCATTTGGCGGCGGCGATGGGGCGGAGGAGGAGGTGGAGGAGAATGTGGGCCATGGTTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCACCTTGCTCTGTGGCGGTTCTTGTGGACCGGGGATTTGGAGCCGGTGTGGCTCAGACGCCTGGGCCTGGGCCCATGATTTGTGTGGGTCAAAGGATTTGTGTTTTGTTTTTTGGTGGGCCTGATGATCGGGAGGCGCTGGAGTTGGGTGGCCGGATGGCGGAGCATCCGGCAGTGAAGGTTACGGTGGTTAGGTTTCGGCAGTCGTCGGCGGCGGATGGGATGGAGGGTAGTAATGTCATTTTGCGTCCGATGCATTCGAAATCAAGCGATAACCATTATAGCTTCATCACCACTCCGATCAACCGGGAAAAAGAAAAGGAGGTAGATGAAGCAGCATTGGCAGAATTCAAAAGCAAATGGGAAGCAACAGTTGAGTACAAAGAGAAGGAGGTCAGCAACACAAACATGATAGTTGAAGGGGTAGTAGCCCTCGGAAAGGAAGGCAGTTACGACCTAATCGTGGTCGGGAAGGGTCGGGTTCCCTCGAGCTTGGTGGTGAAACTAGCGGACCGACCAGCAGAGCACGCCGAGTTGGGGCCAGTGGGAGACATATTGGCCAGCTCTGGCAAGGGAATAGTATCTTCAATATTGATAATTCAGCAACATGGAGGAGGTGGCCACGCAGAAGAAACTCCAGTTTTGAAGATAGCACAATCCAATAAGAATGAGCTGCCTATGTCAACTGATGGAACCTCAATTGATCATGTATAA 2568 51.67 MNNMNISSIKTASNGIWQGDNPLHFAFPLLILQSVLILVLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLNHIFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGKRAFGIALAGISVPFFSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSEKSPLVSVWVLLSGAGFVVFMMVVTRPGMKWVARRCTYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMVFLIPAREALALGVLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSANDSPVDDELRILACVHSSGNVPSLITLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRAFGGGDGAEEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAGVAQTPGPGPMICVGQRICVLFFGGPDDREALELGGRMAEHPAVKVTVVRFRQSSAADGMEGSNVILRPMHSKSSDNHYSFITTPINREKEKEVDEAALAEFKSKWEATVEYKEKEVSNTNMIVEGVVALGKEGSYDLIVVGKGRVPSSLVVKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGGHAEETPVLKIAQSNKNELPMSTDGTSIDHV 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16233876 16240036 + PI0020771.1 Cmetu08g1910 364721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1910 855 Gene3D - 29 437 IPR038770 -
Cmetu08g1910 855 Pfam Sodium/hydrogen exchanger family 36 429 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Cmetu08g1910 855 PANTHER CATION/H + ANTIPORTER 7 821 - -
Cmetu08g1910 855 FunFam Cation/H(+) antiporter 15 29 439 - -
Cmetu08g1910 855 Gene3D - 462 796 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1910 K26731 - - csv:101207589 1543.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1694 Cmetu-Chr7:5055002 Cmetu08g1910 Cmetu-Chr8:16233876 2.40E-197 dispersed
Cmetu08g1910 Cmetu-Chr8:16233876 Cmetu11g1833 Cmetu-Chr11:30531655 8.90E-185 dispersed
Cmetu08g1910 Cmetu-Chr8:16233876 Cmetu08g1461 Cmetu-Chr8:2970968 2.00E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g700 Blo01g01126 . Bda01g00243 . . . . . . . Cma03g00436 . Car03g00383 . Sed14g0469 . . Bhi03g01986 Tan03g0976 Cmetu08g1910 . . . . Cla04g00826 Cam04g0889 Cec04g0974 Cco04g1032 Clacu04g0882 Cmu04g0873 Cre04g0930 . Cone10ag0299 . . . Csa04g01471 Chy08g00771 . . . . . . . Bma01g01881 . . Cmo03g00449 . . . . . . Cpe19g00367 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g1833 . 11 819 Antiporter Super Family AT2G13620 72.2 0.0e+00 1163.3
Cmetu07g2010 . 11 785 Antiporter Super Family AT2G13620 50.4 8.5e-209 724.2
Cmetu08g1910 . 77 848 Antiporter Super Family AT3G53720 69.0 2.2e-291 998.4
Cmetu07g2010 . 1 785 Antiporter Super Family AT5G41610 66.9 1.6e-297 1018.8
Cmetu07g1694 . 1 759 Antiporter Super Family AT5G41610 66.7 6.7e-291 996.9
Cmetu07g0419 . 7 790 Antiporter Super Family AT5G41610 64.0 2.3e-283 971.8
Cmetu08g1910 . 9 833 Antiporter Super Family AT5G41610 50.5 4.1e-208 721.8
Cmetu07g2010 . 11 783 Antiporter Super Family AT4G23700 66.2 9.8e-290 993.0
Cmetu07g0419 . 8 790 Antiporter Super Family AT4G23700 62.4 3.6e-276 948.0
Cmetu07g1694 . 9 776 Antiporter Super Family AT4G23700 60.7 5.2e-267 917.5
Cmetu07g2010 . 4 783 Antiporter Super Family AT3G17630 62.9 3.1e-272 934.9
Cmetu07g0419 . 6 790 Antiporter Super Family AT3G17630 59.3 4.0e-256 881.3
Cmetu07g1694 . 11 759 Antiporter Super Family AT3G17630 60.7 4.9e-254 874.4
Cmetu08g1910 . 9 819 Antiporter Super Family AT3G17630 52.8 3.5e-207 718.8
Cmetu07g2010 . 4 785 Antiporter Super Family AT1G64170 57.5 3.1e-240 828.6
Cmetu07g0419 . 3 790 Antiporter Super Family AT1G64170 54.7 2.6e-226 782.3
Cmetu07g1694 . 15 764 Antiporter Super Family AT1G64170 54.7 1.2e-218 756.9
Cmetu11g1833 . 11 819 Antiporter Super Family AT2G13620 72.2 0.0e+00 1163.3
Cmetu07g2010 . 11 785 Antiporter Super Family AT2G13620 50.4 8.5e-209 724.2
Cmetu07g2010 . 4 785 Antiporter Super Family AT1G64170 57.5 3.1e-240 828.6
Cmetu07g0419 . 3 790 Antiporter Super Family AT1G64170 54.7 2.6e-226 782.3
Cmetu07g1694 . 15 764 Antiporter Super Family AT1G64170 54.7 1.2e-218 756.9
Cmetu07g2010 . 11 783 Antiporter Super Family AT4G23700 66.2 9.8e-290 993.0
Cmetu07g0419 . 8 790 Antiporter Super Family AT4G23700 62.4 3.6e-276 948.0
Cmetu07g1694 . 9 776 Antiporter Super Family AT4G23700 60.7 5.2e-267 917.5
Cmetu07g2010 . 1 785 Antiporter Super Family AT5G41610 66.9 1.6e-297 1018.8
Cmetu07g1694 . 1 759 Antiporter Super Family AT5G41610 66.7 6.7e-291 996.9
Cmetu07g0419 . 7 790 Antiporter Super Family AT5G41610 64.0 2.3e-283 971.8
Cmetu08g1910 . 9 833 Antiporter Super Family AT5G41610 50.5 4.1e-208 721.8
Cmetu07g2010 . 4 783 Antiporter Super Family AT3G17630 62.9 3.1e-272 934.9
Cmetu07g0419 . 6 790 Antiporter Super Family AT3G17630 59.3 4.0e-256 881.3
Cmetu07g1694 . 11 759 Antiporter Super Family AT3G17630 60.7 4.9e-254 874.4
Cmetu08g1910 . 9 819 Antiporter Super Family AT3G17630 52.8 3.5e-207 718.8
Cmetu08g1910 . 77 848 Antiporter Super Family AT3G53720 69.0 2.2e-291 998.4
Cmetu01g0797 . 10 790 Antiporter Super Family AT3G52080 52.9 8.8e-235 810.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43