Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1927 ATGAATTTTTCCTCCATTCCTCCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACACATCAAGTGGGAACCAGTAGTAGCACTGCAGTTAGTTCTCAGCTTCTTCCTCCACCGCCACCTCCTCCACCCCCTCCGCCTCCGCCTCCCCATGGCGTCGGTGGTGCCAGTTCGATCCGTCCAGGTTCGATGGCCGAACGAGCTCGAATGGCTAATATTCCCATGCCTGAGGCTGCATTGAAATGCCCAAGATGTGAATCGAACAACACTAAGTTTTGTTACTTTAACAATTATAGCCTTACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGAGGCGGGGCCCTACGGAACGTACCGGTCGGGGGTGGCTGCCGGAGGAACAAAAGAAGCAAAGGGAGTAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGCCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGTCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTTAGTGACTTCGACATCGGCAGTTACAGCTACGGGGGTGGCCTCTCAGCTCCCGCCACCGCTACCGGTGACCTGAATTTCCAATTGGGCAACACTAATTTAGGTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCACCAACAGTGGAGGCTCCAGCAACAACCTCCTCAATTTCCCTTCTTATCTAGTTTAGACCCTTTCGAAGGCGGTAATGGTGGCGGCGGAGAAGCAACCGGAACCGGGTGGCAAATGAGGCCAAAAGTACCACCAACAAGTTCAAGGAATAATTTAACCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATAATGTTGGAAGGCAATTTATTGGGAATAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTTAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1029 49.76 MNFSSIPPYLDPSNWQQQVTHQVGTSSSTAVSSQLLPPPPPPPPPPPPPPHGVGGASSIRPGSMAERARMANIPMPEAALKCPRCESNNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSANSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGSYSYGGGLSAPATATGDLNFQLGNTNLGGGTSIGSLLGFDHQQWRLQQQPPQFPFLSSLDPFEGGNGGGGEATGTGWQMRPKVPPTSSRNNLTQMGNSVKMEETPDQVNNNVGRQFIGNNEQYWSSGSMAWSDLSGFSSSSSTRNPL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22197890 22199760 - PI0024631.1 Cmetu08g1927 364738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1927 342 MobiDBLite consensus disorder prediction 264 285 - -
Cmetu08g1927 342 MobiDBLite consensus disorder prediction 138 173 - -
Cmetu08g1927 342 MobiDBLite consensus disorder prediction 1 33 - -
Cmetu08g1927 342 SUPERFAMILY Formin homology 2 domain (FH2 domain) 40 48 - -
Cmetu08g1927 342 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Cmetu08g1927 342 MobiDBLite consensus disorder prediction 1 60 - -
Cmetu08g1927 342 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Cmetu08g1927 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 238 IPR045174 GO:0003700|GO:0006355
Cmetu08g1927 342 MobiDBLite consensus disorder prediction 121 179 - -
Cmetu08g1927 342 Pfam Dof domain, zinc finger 79 134 IPR003851 GO:0003677|GO:0006355
Cmetu08g1927 342 MobiDBLite consensus disorder prediction 34 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1927 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g1927 Cmetu-Chr8:22197890 Cmetu10g0790 Cmetu-Chr10:15962654 2.20E-46 dispersed
Cmetu11g2570 Cmetu-Chr11:6546425 Cmetu08g1927 Cmetu-Chr8:22197890 4.20E-37 wgd
Cmetu12g0342 Cmetu-Chr12:23503487 Cmetu08g1927 Cmetu-Chr8:22197890 3.00E-40 wgd
Cmetu08g1957 Cmetu-Chr8:16170331 Cmetu08g1927 Cmetu-Chr8:22197890 3.00E-41 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g2109 . 17 177 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.4e-44 176.4
Cmetu04g2899 . 6 164 C2C2-Dof Transcription Factor Family AT1G29160 50.9 1.4e-39 159.8
Cmetu09g0093 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.9e-42 168.7
Cmetu12g2109 . 17 177 C2C2-Dof Transcription Factor Family AT2G34140 55.3 1.7e-42 169.5
Cmetu04g2899 . 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.5e-38 155.6
Cmetu08g1927 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 65.2 2.6e-39 159.8
Cmetu10g0790 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 61.7 3.4e-39 159.5
Cmetu09g0093 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 8.0e-44 174.9
Cmetu12g2016 . 1 108 C2C2-Dof Transcription Factor Family AT5G62940 65.4 9.3e-38 154.8
Cmetu08g1957 . 42 122 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.2e-37 153.7
Cmetu10g0790 . 1 132 C2C2-Dof Transcription Factor Family AT5G02460 62.6 8.4e-37 151.8
Cmetu08g1957 . 43 134 C2C2-Dof Transcription Factor Family AT3G55370 74.5 6.0e-37 152.1
Cmetu08g1927 . 53 135 C2C2-Dof Transcription Factor Family AT3G55370 80.7 7.8e-37 151.8
Cmetu02g1182 . 28 332 C2C2-Dof Transcription Factor Family AT5G60850 51.0 7.2e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8450 PF02701 zf-Dof 6.30E-32 No_clan Cmetu TF