Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1948 ATGGGAGTTCCACAGGCCATGGAAATTCTGACCGAGAGAGCCGCACTTGTTCGAGAGTCGCTTCAAAAGAGCCAGAATGTCACCGAGAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAACCGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTGGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGACCACACGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAACCGCTACTTTATTGGGAACAAAAATTTCAAAAGTAATGAAGCTATTCTTACCCACACAAGCAACTTGCTTGTTAAAGCCATTTCAAAGCTAGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTATTCGATTGCCTCCCCAACTCTTTGCGTCCATCGTCAGCATCTGCACACCATGGTGATAGTGGTAACAAAAATAACTCTGACCATCACAACAAAAGCTTAGAAGCTGCCGTCTTCATTCCCCCAACTCTAATCCCGCCCAGGGTTCTTCCATTGTTGCATGACTTGGCTCAACAAATGATTCAGGCTGGTCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTCAGGAAATTAGGTGTTGAGAGGCTTACCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATCTGTGATCAAATTTTTGACGGTGCAGACTCTCTCCAAGATCAATGCTTCGCTGACGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCCATTGCCAGAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAGTCAGAGATTGAAACACTTTTTGGAAGTAAAGCATGTATTGAAATGCGGGATTCTGCATTGAGCTTAACCACACGCCTTGCCGAGACAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACGGCAGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTCTGTTTGACTACCAATCTACTCTGAAGCAGCTATTCCAAGATTTTGACGCTAGTGATCCAGATGCTCAGATAGCAGTGGTAACTACAAGAATCATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAACAATATAGGGATCCTGCACTAACTCAATTATTTCTTATGAACAATATTCACTATATAGTGAGATCCGTCCGAAGGTCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTGCAGCAGCATGCAAATCAATACAAGCGGATCTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAGGCCTCAGGTAGTGGAGGTGGTTCGGGAGATGTTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTAAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATACATCAGATATTCACCCGAGGATCTCGAGCGTATGCTAAATGAATTTTTTGAAGGCAAGACATTCAGTGAGCAAAAACGCTAG 1917 43.77 MGVPQAMEILTERAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFIGNKNFKSNEAILTHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAHHGDSGNKNNSDHHNKSLEAAVFIPPTLIPPRVLPLLHDLAQQMIQAGHQQQLFRIYRDTRASVLEQSLRKLGVERLTKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIARSKRSPEKLFVLLDMYEIMRELQSEIETLFGSKACIEMRDSALSLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQIAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGGSGDVSSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17874076 17881755 - PI0002811.1 Cmetu08g1948 364759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1948 638 Gene3D Exocyst complex component Exo70 75 638 - -
Cmetu08g1948 638 SUPERFAMILY Cullin repeat-like 76 629 IPR016159 -
Cmetu08g1948 638 PANTHER EXOCYST COMPLEX PROTEIN EXO70 57 630 IPR004140 GO:0000145|GO:0006887
Cmetu08g1948 638 Pfam Exo70 exocyst complex subunit 273 626 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1948 K07195 - - csv:105436019 1217.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1613 Cmetu-Chr3:3761226 Cmetu08g1948 Cmetu-Chr8:17874076 7.10E-60 dispersed
Cmetu08g1948 Cmetu-Chr8:17874076 Cmetu10g0057 Cmetu-Chr10:20986075 6.50E-265 dispersed
Cmetu08g1948 Cmetu-Chr8:17874076 Cmetu04g0927 Cmetu-Chr4:15738148 8.90E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g903 Blo01g01242 . . . . . . . . . . Cma07g00826 Car03g01010 Car07g00813 Sed14g0274 Cpe10g00315 . Bhi03g01779 Tan03g1260 Cmetu08g1948 . Hepe04g1072 . . . . . . . . . . . Cone13ag1144 Cone19ag1123 Lsi01g01185 Csa06g02721 Chy08g00976 . . . . . . . Bma01g02005 . . Cmo03g01110 Cmo07g00855 . . . . . Cpe19g00500 . . . . . . . . . . . . . . . . . Cme08g01155
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0057 . 12 634 EXO70 exocyst subunit family AT5G03540 73.6 5.9e-269 923.7
Cmetu08g1948 . 1 638 EXO70 exocyst subunit family AT5G03540 71.4 1.5e-267 919.1
Cmetu08g1948 . 1 638 EXO70 exocyst subunit family AT5G52340 80.1 2.0e-298 1021.5
Cmetu10g0057 . 14 634 EXO70 exocyst subunit family AT5G52340 71.1 1.0e-254 876.3
Cmetu08g1948 . 145 631 EXO70 exocyst subunit family AT5G52350 63.1 2.2e-174 609.4
Cmetu10g0057 . 134 634 EXO70 exocyst subunit family AT5G52350 60.4 5.2e-168 588.2
Cmetu12g0418 . 1 630 EXO70 exocyst subunit family AT5G58430 66.6 2.3e-246 848.6
Cmetu12g0418 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.2e-174 609.4
Cmetu07g1382 . 77 676 EXO70 exocyst subunit family AT5G13150 54.4 1.9e-174 609.8
Cmetu09g0691 . 92 703 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-191 664.8
Cmetu04g0927 . 9 597 EXO70 exocyst subunit family AT1G72470 63.9 2.6e-205 712.2
Cmetu04g0927 . 9 595 EXO70 exocyst subunit family AT1G54090 61.3 1.1e-200 696.8
Cmetu04g0927 . 9 596 EXO70 exocyst subunit family AT3G14090 62.8 2.9e-209 725.3
Cmetu02g0875 . 13 651 EXO70 exocyst subunit family AT5G50380 62.7 2.8e-229 792.0
Cmetu12g0357 . 25 663 EXO70 exocyst subunit family AT5G50380 62.6 8.9e-228 786.9
Cmetu03g1613 . 13 682 EXO70 exocyst subunit family AT4G31540 73.5 7.1e-294 1006.5
Cmetu10g1827 . 43 586 EXO70 exocyst subunit family AT3G55150 51.5 9.6e-152 534.3
Cmetu11g2447 . 35 600 EXO70 exocyst subunit family AT3G55150 50.1 1.2e-149 527.3
Cmetu10g1827 . 12 586 EXO70 exocyst subunit family AT2G39380 52.0 2.9e-156 549.3
Cmetu08g0872 . 27 632 EXO70 exocyst subunit family AT3G09520 54.6 4.5e-178 621.7
Cmetu11g2447 . 33 610 EXO70 exocyst subunit family AT5G59730 50.2 5.1e-153 538.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74