Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1975 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGGAAAGAGAACGCTTCGAGTCCTGAATTGAAGCGAGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCTAAGGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTATCGAATCCCGTAGTTTCTCCTAAAGAGAATCATTTCCATGATATTACTAGCCAGCCTGAGGAGCTAGAAAATACTACCCAAGTTGAGCGTGGGGAGCTTACGTCGGCTTGTTCGGGGAATTCAAGTTCGGAGGATATCTCAAGCGATGGAGTTCGTTGCCAGAATGACATGTCTCAAAACGACGTTGATATGTGTGATGTCGACGAGGTTTCTCGGGTTGTGATTGAAATCCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAAAAGGATAACAATGGTGCATCCATTTCAGCAGACAAAGTTCATTCTCATGGAAACTCTGACAGGGACGGTAAACCAGAACCTTCATTGTTGGATGATGCTTGTACGGAAACGTCTGCACATAGCTGGGAAGGTTTTGCTGAGAGCAGCAGGTATTCTTTAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCTACGACAAGCGAGATGAAGCTACAAGGTATTATAAGTGGCGGAGGTTACATGTGCGGATGTTCAACATGCAATTTTACAGCTATTCTTAGTGCTTATGAGTTCGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAAAACGGAAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTATGGAAGTAGCGGGTTCATCTGTTAACATGAATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGGACAGTGCAAATATTGTAGTGGAAAATCATGATGCGAAGCTTCCTAAACTGTCACATCCAGTTGAGAGACCAAATCCTAATTTTTCCAATGCAGTCTTGCAACACAAGAAAACGCATTCCTTGTCACTGATAATTTTCCACTATATTTGCAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTGGCATACTTTGTGAAAGGACAGAGAATACTCGGAGGCTTCAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATTAGCCCCTCCCAGTTTGAGGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCATGATATTGCAATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTAGGTTCCAATTCGAAGGCTATTTCTGGAGGTTCTTTGAGTTTTTCAAAGCCAATTGTTTTTCGGTTGACACGAGTTGTTAAAGCACCAGAATATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTCTGTGATCAATGTGAAAGAGAATTCCATGTAGGTTGTCTGCGAGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCACGTGGCCCTTCAGAATACAGTTTTGAATGGGGCACAAATCATTCCAGATTCATTATCAGATTTGATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTATCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTACTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAACTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGTTGAATCTTTTTCTTTTTCTTATGGCTGGCTTTTTATGCGCAGGGTTACTTCCAAGTATTGTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTTCTCCCTGCAGCCGAGGATGCCGAATCAATTTGGACCAAGAAATTGGGCTTTAGAAAGATGAGCGAAGAACAGTTGATTAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCAATGCTAGAGAAGGTGGTGCAGCAGTCGACGTTATAA 2586 42.23 MGEEAAGLAAVTNEPLGKENASSPELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEVSNPVVSPKENHFHDITSQPEELENTTQVERGELTSACSGNSSSEDISSDGVRCQNDMSQNDVDMCDVDEVSRVVIEIPKHASSTGIRKITFKFSKKKDNNGASISADKVHSHGNSDRDGKPEPSLLDDACTETSAHSWEGFAESSRYSLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLQGIISGGGYMCGCSTCNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIMEVAGSSVNMNSFEAWKASFHQDSANIVVENHDAKLPKLSHPVERPNPNFSNAVLQHKKTHSLSLIIFHYICRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGFKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSNSKAISGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKLNLFLFLMAGFLCAGLLPSIVSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVQQSTL 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22122306 22128217 - PI0024980.1 Cmetu08g1975 364786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1975 861 MobiDBLite consensus disorder prediction 79 111 - -
Cmetu08g1975 861 MobiDBLite consensus disorder prediction 1 111 - -
Cmetu08g1975 861 ProSitePatterns Zinc finger PHD-type signature. 497 536 IPR019786 -
Cmetu08g1975 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 634 IPR013083 -
Cmetu08g1975 861 ProSiteProfiles Zinc finger PHD-type profile. 573 634 IPR019787 -
Cmetu08g1975 861 SMART PHD_3 496 537 IPR001965 -
Cmetu08g1975 861 SMART PHD_3 575 632 IPR001965 -
Cmetu08g1975 861 MobiDBLite consensus disorder prediction 161 188 - -
Cmetu08g1975 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 557 IPR013083 -
Cmetu08g1975 861 MobiDBLite consensus disorder prediction 21 56 - -
Cmetu08g1975 861 Pfam Tify domain binding domain 430 479 IPR032308 -
Cmetu08g1975 861 Pfam Tify domain binding domain 258 312 IPR032308 -
Cmetu08g1975 861 SUPERFAMILY FYVE/PHD zinc finger 574 629 IPR011011 -
Cmetu08g1975 861 MobiDBLite consensus disorder prediction 170 185 - -
Cmetu08g1975 861 SUPERFAMILY FYVE/PHD zinc finger 492 539 IPR011011 -
Cmetu08g1975 861 ProSitePatterns Zinc finger PHD-type signature. 576 631 IPR019786 -
Cmetu08g1975 861 PANTHER AUTOIMMUNE REGULATOR 25 854 - -
Cmetu08g1975 861 ProSiteProfiles Zinc finger PHD-type profile. 494 539 IPR019787 -
Cmetu08g1975 861 FunFam PHD zinc finger protein 574 634 - -
Cmetu08g1975 861 Pfam PHD-finger 496 538 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1975 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2275 Cmetu-Chr4:4574614 Cmetu08g1975 Cmetu-Chr8:22122306 1.40E-138 dispersed
Cmetu08g1975 Cmetu-Chr8:22122306 Cmetu10g0397 Cmetu-Chr10:16078799 6.40E-42 dispersed
Cmetu08g1975 Cmetu-Chr8:22122306 Cmetu11g0706 Cmetu-Chr11:5387624 8.20E-146 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0401 . 48 537 PHD Transcription Factor Family AT3G14980 57.1 1.2e-163 574.7
Cmetu08g1975 . 18 856 PHD Transcription Factor Family AT3G53680 52.8 5.8e-245 844.3
Cmetu10g0397 . 415 544 PHD Transcription Factor Family AT3G53680 54.6 1.2e-37 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8458 PF16135 TDBD 2.20E-12 No_clan Cmetu TR