Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu08g1984 ATGCGCGGTGCCTCTCGAGCTCCGAACCCGTCGGAGCCACTGCCTCACTCCCAAACTGCCCAGATCCTGCCCCCTCTCAACACTCTCAACCGTCAGCTCGCTTTCGACTCTGCTAACCCGCCCTTTGTTCCACCGGGTCATTATTACCATTTTGGCGGCGGTTCTTCCAATGCTATTGATAAACAACCTGATACCATCGTGGTTAAACCTCTCAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTAAATCGAATGACTACATTCATGATGAGGGATCTTCAAAAGATGCTCTTAGCTGTGTTCAGACACCTGTGTCTGCAAAAGGAGGAAGAGTGTACAATAAGTCAAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCTGCTGGAAACTGTCGATATGACAGTTCTTTAGGTAACTTTGCAATTATTGACAATTTAGTATTATTCATTCTGTCTTCTGACAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTTAATCAACAAATTCCAGGAAATGTGGATAGTGATGCTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCCTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGCATTTGAGTGAAGATGAAAATATCCAAAAGTGGCTCTTTGTAACAGAAGACGACATTAAAAACTTGCCTTGTTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAATGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATTGAACTTCAAGCTCATCTGTCCCAACATAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTCTTCCTTCAGATGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTTTGAATTTGACTGGAACTCACGCTCAACTGTACAGTGTAATTTTTATAACCCAAGTAATATATTGGGAAAATTTTCCAAGCATGGTATAGAATACAATTGCAAGAGCTAG 1437 40.36 MRGASRAPNPSEPLPHSQTAQILPPLNTLNRQLAFDSANPPFVPPGHYYHFGGGSSNAIDKQPDTIVVKPLKPKQKGVMYNNVVKSNDYIHDEGSSKDALSCVQTPVSAKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGNFAIIDNLVLFILSSDKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDASMLQVDVENLSFEERRLDDKIRAMQERLRHLSEDENIQKWLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEIELQAHLSQHSSSCDVNGSNEFPGGMMKILPSDVDNDADYWLLSDAEVSITDMWRTDFEFDWNSRSTVQCNFYNPSNILGKFSKHGIEYNCKS 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17838097 17843984 - PI0012218.1 Cmetu08g1984 364795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu08g1984 478 Gene3D - 142 229 IPR036388 -
Cmetu08g1984 478 Gene3D - 233 343 - -
Cmetu08g1984 478 SUPERFAMILY E2F-DP heterodimerization region 240 343 IPR037241 -
Cmetu08g1984 478 Coils Coil 246 273 - -
Cmetu08g1984 478 Pfam E2F/DP family winged-helix DNA-binding domain 171 226 IPR003316 GO:0005667|GO:0006355
Cmetu08g1984 478 SMART E2F_TDP_2 148 226 IPR003316 GO:0005667|GO:0006355
Cmetu08g1984 478 MobiDBLite consensus disorder prediction 114 138 - -
Cmetu08g1984 478 MobiDBLite consensus disorder prediction 111 138 - -
Cmetu08g1984 478 FunFam E2F transcription factor 1 142 228 - -
Cmetu08g1984 478 Pfam E2F transcription factor CC-MB domain 242 342 IPR032198 GO:0046983
Cmetu08g1984 478 PANTHER TRANSCRIPTION FACTOR E2F 100 445 IPR015633 GO:0000978|GO:0006357
Cmetu08g1984 478 SUPERFAMILY Winged helix DNA-binding domain 171 224 IPR036390 -
Cmetu08g1984 478 CDD E2F_DD 242 343 IPR032198 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu08g1984 K06620 - - csv:101212480 691.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0961 Cmetu-Chr2:24031801 Cmetu08g1984 Cmetu-Chr8:17838097 5.50E-06 dispersed
Cmetu03g0122 Cmetu-Chr3:2332835 Cmetu08g1984 Cmetu-Chr8:17838097 1.50E-53 dispersed
Cmetu05g1511 Cmetu-Chr5:21381479 Cmetu08g1984 Cmetu-Chr8:17838097 1.80E-87 dispersed
Cmetu08g1984 Cmetu-Chr8:17838097 Cmetu12g1244 Cmetu-Chr12:2268870 1.90E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8460 PF16421 E2F_CC-MB 1.00E-32 No_clan Cmetu TF