Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0093 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGTCCAAAACCAAGTGTTTCAATTTTAGAGAGAAAAATTAGACCACAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAAGCAATACAAAGTTTTGTTATTACAATAATTATAGTCTCACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCTTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGAAAAAACAAAAGACCTTCTTCTAATTCTTCATCTACATCTCCCACACCACCTAATTCTTCTTCTCAACCTAATTTCCCCAAGAAAATTCTTGATCAGCTCCCTCATAACCCTAAAATCACCCCCTCCCAAGATCTCAACTTGTTTTTTCCACCCTCAAACAATCAAGATCATCATCGCTTCACCACTAGTAACAACCTCTCCGAAATGATTCTTGTCGGTAGTAATCCTTCGATTAATAATGCCTCCTCTTCCTCGGCTTCTGCAACGACGACAATGTCATCGCCGCCCCCATCGCAACCTTCGGTTATGGAGCTTCTCACCGGGATGGCGAATAACAATAACAACAACAACAACTCTAGCAGGGGTTTGAATTGTTTTGTTCCAATGTCGTCGGTTGTTGTCCCTGATCCTGGCTCTGTTTACAGTACGGTAGGGTTTCCTGATCTTCATGATCAATTCAAGCCGAGCCTTGGATTCTCTCTCGATGGATATGGTGTCATCCCGACCGAGGCAGGTAATGGTGCGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGATCTAATGGAGTTGAACAAGGGAAAGAGCAAGGAGATGATCATAATTCAAGTGGGTATTGGAGTGGAATGTTGGGTGGAGGATCATGGTAA 936 42.52 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSNSSSTSPTPPNSSSQPNFPKKILDQLPHNPKITPSQDLNLFFPPSNNQDHHRFTTSNNLSEMILVGSNPSINNASSSSASATTTMSSPPPSQPSVMELLTGMANNNNNNNNSSRGLNCFVPMSSVVVPDPGSVYSTVGFPDLHDQFKPSLGFSLDGYGVIPTEAGNGAGRLMQLPFEDLKQGSNGVEQGKEQGDDHNSSGYWSGMLGGGSW 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1224293 1226390 - PI0000276.1 Cmetu09g0093 364966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0093 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 191 IPR045174 GO:0003700|GO:0006355
Cmetu09g0093 311 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Cmetu09g0093 311 MobiDBLite consensus disorder prediction 174 193 - -
Cmetu09g0093 311 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Cmetu09g0093 311 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Cmetu09g0093 311 MobiDBLite consensus disorder prediction 129 153 - -
Cmetu09g0093 311 MobiDBLite consensus disorder prediction 84 153 - -
Cmetu09g0093 311 MobiDBLite consensus disorder prediction 94 120 - -
Cmetu09g0093 311 MobiDBLite consensus disorder prediction 281 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0093 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2234 Cmetu-Chr4:5681320 Cmetu09g0093 Cmetu-Chr9:1224293 4.70E-28 dispersed
Cmetu09g0093 Cmetu-Chr9:1224293 Cmetu11g1746 Cmetu-Chr11:6026316 7.50E-33 dispersed
Cmetu03g1311 Cmetu-Chr3:9993738 Cmetu09g0093 Cmetu-Chr9:1224293 1.30E-27 transposed
Cmetu06g2309 Cmetu-Chr6:8363851 Cmetu09g0093 Cmetu-Chr9:1224293 1.60E-32 transposed
Cmetu06g2678 Cmetu-Chr6:591801 Cmetu09g0093 Cmetu-Chr9:1224293 9.40E-30 transposed
Cmetu11g1023 Cmetu-Chr11:2253705 Cmetu09g0093 Cmetu-Chr9:1224293 9.10E-26 transposed
Cmetu09g1760 Cmetu-Chr9:169501 Cmetu09g0093 Cmetu-Chr9:1224293 1.40E-29 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g2109 . 17 177 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.4e-44 176.4
Cmetu04g2899 . 6 164 C2C2-Dof Transcription Factor Family AT1G29160 50.9 1.4e-39 159.8
Cmetu09g0093 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.9e-42 168.7
Cmetu12g2109 . 17 177 C2C2-Dof Transcription Factor Family AT2G34140 55.3 1.7e-42 169.5
Cmetu04g2899 . 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.5e-38 155.6
Cmetu08g1927 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 65.2 2.6e-39 159.8
Cmetu10g0790 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 61.7 3.4e-39 159.5
Cmetu09g0093 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 8.0e-44 174.9
Cmetu12g2016 . 1 108 C2C2-Dof Transcription Factor Family AT5G62940 65.4 9.3e-38 154.8
Cmetu08g1957 . 42 122 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.2e-37 153.7
Cmetu10g0790 . 1 132 C2C2-Dof Transcription Factor Family AT5G02460 62.6 8.4e-37 151.8
Cmetu08g1957 . 43 134 C2C2-Dof Transcription Factor Family AT3G55370 74.5 6.0e-37 152.1
Cmetu08g1927 . 53 135 C2C2-Dof Transcription Factor Family AT3G55370 80.7 7.8e-37 151.8
Cmetu02g1182 . 28 332 C2C2-Dof Transcription Factor Family AT5G60850 51.0 7.2e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8466 PF02701 zf-Dof 5.40E-33 No_clan Cmetu TF