Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0131 ATGCCTGACCTTCATATTTCCCCACCCTCTCCTTCTCTCTCTCTTGCCTCCAGATCCGATCCCACCATTCGAATTTCCAATCATGCTCATAATCGGAGTCTTAGTAGTAGCGATGCTGGACGTCTTAGCCAACGGAGTATTTTTGCTGCTGAGATGGTTGCACGCCATTCCTCCGCTAGGGAGCCTCCGGTTGACGTCAAGATCAATGATATTGTTGGCAATGGTATTTGTGGTATACTCTATAAATGGGTCAACTACGGCAAAGGTTGGCGCCCTCGTTGGTTTGTGCTTCAGGATGGCGTTTTGTCTTACTATAAGATTCATGGACGTGATAAGATCGTTGTCAATCAGGAAACAGAGAAGGGATCCAAGGTCATCGGCGAGGTCTCCATGCGGAGGATTTCCAGGCATAAGAACGGCTTCTCTAATCAGACTCCTCAGCTCCCACTCAGGCGCAAGCCATTTGGGGAAGTTCATCTCAAGGTTTCATCAATTCGAGAAAGCCGATCAGATGATAAGAGGTTTTCCATCTTCACTGGGACAAAGAGACTTCACTTGCGGGCAGAGACCCGCGAGGATCGGGTGGCATGGATGGAAGCATTGCAGGCAGTGAAAGAATTATTCCCAAGGATGTCTAACAGTGAGCTCATGGCGCCTATGGATTTCCTATCTGTGTCAACTGACAGGATTAGACAGCGGCTTCTTGAAGAGGGTGTAAGTGAAACAGCCATTCAGGACACTGAAAATATTATGAAGACTGAATTTGCTGCGTTGCAAAACCAGCTTTTGCTGCTCAAGCAGAAGCAGTGGCAACTTATTGACACACTGCGGCACTTAGAGACAGAAAAGGTTGACTTGGAGAATACAGTAGTTGATGAGAGCCAGAGACAGTCAAATGAGCCTGGGGCCTTGCCTGGTCTGCTGGAAAAGTTTAGTGATGCAAGTGCTACTGAATCTGATGATGATAATGATAGAGTTGATGCCGCAGAGGAAGAAACAGACGAGGAAGAAAACACCTTTTTTGACACTCGAGATTTTTTATCATCAAGTTCATTCAAAAGTAATGGATCTGATTACAGGATATCATCTTTTTCTTCTGATGATGAAGGCCTTCGTACAGTTGATTCTGAGGAGGAGGTGGATCCATCAATTAGATCTGTTGGAACAAATTATCCCTATGTTAAACGGCGCAAGAAATTACCTGATCCAGTTGAAAAGGAGAAGGGGGTTAGTCTTTGGTCAATGATTAAAGACAACATTGGAAAAGATCTCACTAAAATTTGTCTTCCTGTCTTCTTCAATGAGCCTCTTTCTTCTCTGCAAAAGTGTTTTGAAGATTTAGAATATTCATACCTCATTGATCGGGCATATGAATGGGGGAGAAGGGGTGACAGCCTCATGAGGATTCTTAATGTAGCTGCATTTGCTGTATCTGGGTATGCTTCAACTGAAGGAAGAAGTTGTAAACCATTTAACCCACTGTTGGGGGAAACTTATGAGGCTGACTTTCCAGATAAAGGTCTCAAGTTTTTCTCAGAGAAGGTTAGCCATCATCCAATGGTAGTTGCATGCCATTGCGAGGGTAAAGGGTGGAGATTTTGGGGTGATAGCAATTTGAAGAGCAAATTTTGGGGTCGGTCCATTCAGCTTGATCCTGTTGGTCTGTTGACATTAGAATTTGATGATGGAGAAGTCTATCAATGGAGTAAGGTGACAACGTCAATTTACAACCTGATACTGGGAAAGCTGTACTGTGATCATTATGGTACAATGCGCATACAGGGAAATCGTGAATACTCGTGCAAACTAAAATTCAAGGAGCAGTCCATTATTGACAGGAATCCGCACCAGGTACAGGGTATAGTTCAAGATAGATCTGGAAGGACAGTGGCTACATTATTTGGAAAATGGGATGAAAGTATGCATTATATGAATGGGGACTGTTCCCATAAGGGAAAAGGATTGGATTCTTTATCTGAATCCCACCTACTCTGGAAACGAAGCAAGCCACCAAAATTTTCTACTAGATATAACTTCACGCGCTTTGCTATAACTTTGAATGAGCTGACACCAGGCTTGAAGGAAAAGCTGCCTCCTACAGATTCGAGGCTCAGACCTGATCAAAGGTATTTAGAAAATGGAGAGTATGAAATGGCCAACTCAGAAAAGTTGCGATTGGAGCAACGGCAACGTCAGGCTAGGAAGATGCAAGAAAGAGGGTGGAAACCGAGGTGGTTTGCCAAAGATAAGGGAAGTGATACCTATCGTTACATTGGTGGGTACTGGGAAGCCAGAGAGCAGGGGAAATGGGACTCATGCCCTGATATATTCGGTCAGATCCCTACTGATCCCCAACTCGAGTGA 2364 44.29 MPDLHISPPSPSLSLASRSDPTIRISNHAHNRSLSSSDAGRLSQRSIFAAEMVARHSSAREPPVDVKINDIVGNGICGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGRDKIVVNQETEKGSKVIGEVSMRRISRHKNGFSNQTPQLPLRRKPFGEVHLKVSSIRESRSDDKRFSIFTGTKRLHLRAETREDRVAWMEALQAVKELFPRMSNSELMAPMDFLSVSTDRIRQRLLEEGVSETAIQDTENIMKTEFAALQNQLLLLKQKQWQLIDTLRHLETEKVDLENTVVDESQRQSNEPGALPGLLEKFSDASATESDDDNDRVDAAEEETDEEENTFFDTRDFLSSSSFKSNGSDYRISSFSSDDEGLRTVDSEEEVDPSIRSVGTNYPYVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKICLPVFFNEPLSSLQKCFEDLEYSYLIDRAYEWGRRGDSLMRILNVAAFAVSGYASTEGRSCKPFNPLLGETYEADFPDKGLKFFSEKVSHHPMVVACHCEGKGWRFWGDSNLKSKFWGRSIQLDPVGLLTLEFDDGEVYQWSKVTTSIYNLILGKLYCDHYGTMRIQGNREYSCKLKFKEQSIIDRNPHQVQGIVQDRSGRTVATLFGKWDESMHYMNGDCSHKGKGLDSLSESHLLWKRSKPPKFSTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQARKMQERGWKPRWFAKDKGSDTYRYIGGYWEAREQGKWDSCPDIFGQIPTDPQLE 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14013202 14021911 - PI0018430.1 Cmetu09g0131 365004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0131 787 FunFam Oxysterol-binding protein-related protein 2A 708 779 - -
Cmetu09g0131 787 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 76 765 IPR000648 GO:0008289
Cmetu09g0131 787 Coils Coil 319 339 - -
Cmetu09g0131 787 MobiDBLite consensus disorder prediction 291 338 - -
Cmetu09g0131 787 CDD PH_ORP_plant 76 213 - -
Cmetu09g0131 787 SUPERFAMILY Oxysterol-binding protein-like 406 781 IPR037239 -
Cmetu09g0131 787 Coils Coil 276 296 - -
Cmetu09g0131 787 FunFam oxysterol-binding protein-related protein 1D isoform X1 497 669 - -
Cmetu09g0131 787 Gene3D - 74 208 IPR011993 -
Cmetu09g0131 787 Coils Coil 716 739 - -
Cmetu09g0131 787 MobiDBLite consensus disorder prediction 323 338 - -
Cmetu09g0131 787 Pfam Pleckstrin homology domain 77 202 - -
Cmetu09g0131 787 SMART PH_update 74 208 IPR001849 -
Cmetu09g0131 787 Pfam Oxysterol-binding protein 411 766 IPR000648 GO:0008289
Cmetu09g0131 787 ProSiteProfiles PH domain profile. 73 206 IPR001849 -
Cmetu09g0131 787 Gene3D - 497 672 - -
Cmetu09g0131 787 SUPERFAMILY PH domain-like 76 211 - -
Cmetu09g0131 787 Gene3D - 708 770 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0131 K20456 - - csv:101214552 1526.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0704 Cmetu-Chr6:28405166 Cmetu09g0131 Cmetu-Chr9:14013202 5.70E-198 dispersed
Cmetu09g0131 Cmetu-Chr9:14013202 Cmetu10g1454 Cmetu-Chr10:18044068 3.40E-263 dispersed
Cmetu09g0131 Cmetu-Chr9:14013202 Cmetu09g1807 Cmetu-Chr9:3042376 8.60E-235 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g595 . . . . . . . Bma15g00230 . . . . . . Sed01g3038 . Cpe01g01580 Bhi07g01839 Tan04g0129 Cmetu09g0131 Lac13g0113 Hepe10g1564 . . Cla05g02620 Cam05g2807 Cec05g2843 Cco05g2875 Clacu05g2811 Cmu05g2659 Cre05g2775 Cone13ag1096 Cone19ag1086 . . Lsi04g00633 Csa05g02254 Chy10g00824 Cme10g00607 Blo06g00836 . . . . . . . . . . Cma04g01792 . Car04g01807 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004129 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 2 44