Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0153 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTCGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTTTGGGTTGTGATGCCGTATATGTCGGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACGTTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACACGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCGCTTGAATTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACGTTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTCCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTACCTTACTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGATCGCTTTAAGAAGCTAAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAATATAGAAGATCTAGATGTACATACTACACAACAAAGAAACAAGAATAATGAGTTTACCTTTCCGGTAGAGGGTTCATCCCTTGAAAGGCTGAGTTACCCCACTGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATTTGGAGAGTTCGCTTGCTTCTTTCCCTATGAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTATATGTCAGAGAATAAGAGGTCTTTCAGCGGTTCGCTAATTTCTGACAATGCTGTATCTCCTAAAAGATTATTGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCATCAGATGGAACAGTTGTTCAGCGCAAGGGGCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCAGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATCGTTCAACGGGAAGAAATTCTTAAACTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGTATCAGAGACGGTCACCAATGACCTTCTGCAGGTACCGCCAACTTCCTTGAGGGAAAGAGAGTTGCAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTCGTTGAGGAATTAGAGAAGCAAAAATTGAAAAATGCCGAGGTTGAGTCATTAACTCATGTGGGTTTTGGTTCAAATAAATGA 1998 42.39 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLTRTILDGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLSYPTAAASQEDGFNDLHDLESSLASFPMKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKRLLDYLQSKLPSERNYSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNIVQREEILKLIKCLEQMTGKNPDVSETVTNDLLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEVESLTHVGFGSNK 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18993542 19003928 - PI0020666.1 Cmetu09g0153 365026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0153 665 MobiDBLite consensus disorder prediction 499 522 - -
Cmetu09g0153 665 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 647 IPR047173 GO:0043539
Cmetu09g0153 665 Gene3D Transferase(Phosphotransferase) domain 1 97 310 - -
Cmetu09g0153 665 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu09g0153 665 MobiDBLite consensus disorder prediction 449 464 - -
Cmetu09g0153 665 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Cmetu09g0153 665 MobiDBLite consensus disorder prediction 437 464 - -
Cmetu09g0153 665 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cmetu09g0153 665 MobiDBLite consensus disorder prediction 505 522 - -
Cmetu09g0153 665 Coils Coil 622 656 - -
Cmetu09g0153 665 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu09g0153 665 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu09g0153 665 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cmetu09g0153 665 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Cmetu09g0153 665 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Cmetu09g0153 665 CDD STKc_OSR1_SPAK 14 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0153 K08835 - - csv:101205102 1298.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3192 Cmetu-Chr4:10644892 Cmetu09g0153 Cmetu-Chr9:18993542 4.80E-157 dispersed
Cmetu06g0753 Cmetu-Chr6:30282248 Cmetu09g0153 Cmetu-Chr9:18993542 1.10E-148 dispersed
Cmetu06g2431 Cmetu-Chr6:3559439 Cmetu09g0153 Cmetu-Chr9:18993542 5.10E-90 dispersed
Cmetu07g0934 Cmetu-Chr7:21866751 Cmetu09g0153 Cmetu-Chr9:18993542 4.80E-56 dispersed
Cmetu09g0153 Cmetu-Chr9:18993542 Cmetu12g1705 Cmetu-Chr12:1674064 3.70E-29 dispersed
Cmetu09g0153 Cmetu-Chr9:18993542 Cmetu10g0076 Cmetu-Chr10:7068931 5.70E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0934 . 1 693 MAP Kinase Kinase Kinase Kinase AT1G53165 63.1 3.9e-223 771.5
Cmetu10g0076 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.5e-67 253.4
Cmetu07g0934 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 1.7e-231 799.3
Cmetu10g0076 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.6e-67 254.6
Cmetu10g0076 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 1.8e-240 829.3
Cmetu07g0934 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 3.2e-67 253.8
Cmetu09g0153 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 1.5e-251 865.9
Cmetu06g2431 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.1 2.2e-93 340.5
Cmetu06g0753 . 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 4.1e-247 851.3
Cmetu06g0753 . 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 8.6e-247 850.1
Cmetu04g3192 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 2.7e-132 469.5
Cmetu06g0753 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.0 1.0e-118 424.5
Cmetu04g3192 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 2.6e-216 748.8
Cmetu09g0153 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.8e-102 370.2
Cmetu04g3192 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 6.3e-87 318.5
Cmetu06g0753 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 5.5e-75 278.9
Cmetu06g2431 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 1.0e-140 497.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70715 PF00069 Pkinase 2.70E-60 CL0016 Cmetu PK