Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0221 ATGGAAGCCGAATATGAATTGAAAACGAGGGGTTGGGTTCAGTTAATGTCAGTGTTTGGTTTTTCTCAGCCAACGATTGTACAGTATTTGACTGGACTATCCAAACAAGCAACATCATCTGATGATGTAGTGAATAATGGAATTGATGCTTTGAGGAAAATTTCAAGACTGGAGTATTTAAAGAAAAGGGAGGAGAAGAAACTGGAAGAAATCAGAGATGATATAGAAGATGAGCAATATCTTTTTGAAGGTGTGAAGATTACTGAAGCAGAATATCGGGAGCTAAGGTATAAAGGGAAATTATATGAGCTTGTGAAGAAGGGAATATATGAGGCCGATGACATCAATGAGTACAGGATGCCTGAGGCTTATGATCAAGAAGGGGGGAAAGCAACAATGAAATTCGGTTCGAAAAACAAAAAGCAAGCATCAGATGACTATCGGTTTGAATTTGAGGATCAGATTGAGTTTATTAAGGGATCGGTTATGGAAGTTGATGAGTTTATTGATGAACGTCAGACTGGATCACTTGAGAAGTCCAAGGCTAAGTCAGCTCTGGAGAAGCTGCAGGAAGAGAGAAAAGCATTGCCAATCTATCCATATCGTGAGCAGTTACTTCAAGCTATTATTGATTATCAGGTTCTTGTAATTGTTGGTGAAACTGGTTCTGGAAAGACCACGCAGATACCTCAATATCTCCATGAAGCTGGGTACACAAAGCGACGAAAAGTTGGGTGCACACAACCACGTCGAGTTGCTGCAATGAGCATTGCTGCTCGAGTATCTCAAGAACTAGGTGTCAAGCTTGAGCATGAAGTTGGTTATTCAATACGTTTTGAGGATTTTACGTCAGACAAGACTGTTTTAAAGTACATGACGGATGGGATGTTGTTACGGGAATTCCTTGGTGAACCTAATCTTGCAAGGTTTGGACCTGATTTGAAGTTGCTAATTTCAAGTGCAACACTTGATGCCGAGAAGTTTAGTGATTACTTTGATTCAGCTCCAATATTTAAAATTCCTGGTAGACGTTATCCTTTGGATGCAGCAATTGTGACTGCTCTTCAGATCCATGTCACAAAGCCTCCAGGAGATATATTGGTGTTTCTCACTGATCAAGAAGAGATTGAAGCAGCTGAGGAAATAATGAAACATAGAACTCGAGGTCTAGGAACCAAAATTGCAGAACTCATTATCTGCCCCACATATGCTAACTTACCAACGGAGCTACACGCTAAGATATTTGAAACCACAGCTATAGGAGCAAGAAAAGTTGTCCTAGCAACTAATATAGCAGAGACATCCTTGACTATTGATGGGATAAAATATACTGGGATGGAGGCATTGCAAGTGAGTCCCATCTCTAAAGCATCAGCAAATCAGAAAGCATGCCGTTCTGGACGAACAGGCCCCGGAATGTGCTTTCGTTTGTATACTGCTTATAATTATTGTAATGAGATGGAAGACAATACTGTACCAGAAATACAAAGAACAAACTTTGGTAATGTGGTGCTTACACTTAAGAGCCTCGGTATTCATGACTTGGTAAATTTTGATTTTATGGACCGACATCCATCTGAAGCATTGCTAAAAGCTTTGGAATTGCTTTATGCACTAGGTGCTCTAAAGAAAGTTGGTGAACTGACTAAGTTGGGCAGGCGGATGGCAGAGTTTCCTCTTGATCCCATGCTTTCTAAGATGATGGTTGCTTCTAAAAATTTCAAATGTTCAGATGAGATTATTTCTATTGCAGAAGGATTAACAAGTTCATGGTGA 1776 39.98 MEAEYELKTRGWVQLMSVFGFSQPTIVQYLTGLSKQATSSDDVVNNGIDALRKISRLEYLKKREEKKLEEIRDDIEDEQYLFEGVKITEAEYRELRYKGKLYELVKKGIYEADDINEYRMPEAYDQEGGKATMKFGSKNKKQASDDYRFEFEDQIEFIKGSVMEVDEFIDERQTGSLEKSKAKSALEKLQEERKALPIYPYREQLLQAIIDYQVLVIVGETGSGKTTQIPQYLHEAGYTKRRKVGCTQPRRVAAMSIAARVSQELGVKLEHEVGYSIRFEDFTSDKTVLKYMTDGMLLREFLGEPNLARFGPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPLDAAIVTALQIHVTKPPGDILVFLTDQEEIEAAEEIMKHRTRGLGTKIAELIICPTYANLPTELHAKIFETTAIGARKVVLATNIAETSLTIDGIKYTGMEALQVSPISKASANQKACRSGRTGPGMCFRLYTAYNYCNEMEDNTVPEIQRTNFGNVVLTLKSLGIHDLVNFDFMDRHPSEALLKALELLYALGALKKVGELTKLGRRMAEFPLDPMLSKMMVASKNFKCSDEIISIAEGLTSSW 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21310588 21312611 - PI0014506.1 Cmetu09g0221 365094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0221 591 Gene3D - 516 590 - -
Cmetu09g0221 591 Pfam Helicase associated domain (HA2) 532 588 IPR007502 GO:0004386
Cmetu09g0221 591 Gene3D - 341 491 IPR027417 -
Cmetu09g0221 591 SMART helicmild6 380 470 IPR001650 -
Cmetu09g0221 591 SMART ultradead3 194 352 IPR014001 -
Cmetu09g0221 591 PANTHER ATP-DEPENDENT RNA HELICASE 144 588 - -
Cmetu09g0221 591 Pfam Helicase conserved C-terminal domain 357 470 IPR001650 -
Cmetu09g0221 591 Gene3D - 310 340 IPR027417 -
Cmetu09g0221 591 Gene3D - 159 309 IPR027417 -
Cmetu09g0221 591 SMART ha2_5 531 591 IPR007502 GO:0004386
Cmetu09g0221 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 583 IPR027417 -
Cmetu09g0221 591 Coils Coil 54 81 - -
Cmetu09g0221 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 341 IPR014001 -
Cmetu09g0221 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 511 IPR001650 -
Cmetu09g0221 591 CDD SF2_C_RHA 346 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0221 K12813 - - csv:101206270 867.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0145 Cmetu-Chr2:23415489 Cmetu09g0221 Cmetu-Chr9:21310588 7.00E-06 dispersed
Cmetu09g0221 Cmetu-Chr9:21310588 Cmetu12g0411 Cmetu-Chr12:5412031 2.40E-80 dispersed
Cmetu09g0221 Cmetu-Chr9:21310588 Cmetu03g1657 Cmetu-Chr3:23788565 1.50E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39