Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0362 ATGGGGAAGAAGGGGGGTTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAAACAGTGACATCTGCAGAGCCAGCTTCATTCGATGTGTCTGTTCTACCAATTGAAGAGGTGAAATTAGCAGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTTGCTGCCGAGGCAGCCGTTGCAGCTGCTCAGGCTGCAGCGGAGGTCGTTAGGCTCACTACTATCCCTCGGTACTCTGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATTTGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGTATGCAGACTCTTGCTCGTGTCCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGACAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAATAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGCTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCCAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAAACTAAGAGCACCATCGATTATCACGATCGTGGCTCCGTCAAGAGCGTGATCAGCCACACAACCTCGATCGGAGACATCGCCAAAGCTTACGCCCGTCGCGATCTCAATCTCGACATCATCAAGCCGTTTCCAAGGACTCCAACGAGCCAAAAAACAAGCCGAGCTCCGAGTCACCAATCGCCAGCGACTCCTACGAAGGCGCATTCGTCACTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCCGATTCCAGAAGCGCATTGAGCGTGAAATCGGAAAGGTATCGGCGACACAGCATTGCTGGATCATCAGTGAGAGATGATGAAAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCGACAGAAGCAGCGAGGGCTAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAAGACGGTTGCGACTCCGGCGAGTGTTGGAGCAAAGAAACGGCTGTCATTCCCAGCGTCGCCGGCGAACTCAAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGGAGAGAGAGAATTTACCGGCGAGAGCAGATAG 1449 49.34 MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVTSAEPASFDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLANRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTIDYHDRGSVKSVISHTTSIGDIAKAYARRDLNLDIIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTVATPASVGAKKRLSFPASPANSRRHSGPPKIDASPIKNVGEREFTGESR 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17585457 17589882 + PI0011370.1 Cmetu09g0362 365235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0362 482 MobiDBLite consensus disorder prediction 378 395 - -
Cmetu09g0362 482 PANTHER IQ-DOMAIN 5-RELATED 1 461 - -
Cmetu09g0362 482 MobiDBLite consensus disorder prediction 17 38 - -
Cmetu09g0362 482 MobiDBLite consensus disorder prediction 323 482 - -
Cmetu09g0362 482 Gene3D - 91 142 - -
Cmetu09g0362 482 MobiDBLite consensus disorder prediction 325 352 - -
Cmetu09g0362 482 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Cmetu09g0362 482 MobiDBLite consensus disorder prediction 396 412 - -
Cmetu09g0362 482 Coils Coil 177 197 - -
Cmetu09g0362 482 SMART iq_5 113 135 IPR000048 GO:0005515
Cmetu09g0362 482 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0362 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0790 Cmetu-Chr1:3724439 Cmetu09g0362 Cmetu-Chr9:17585457 2.90E-16 dispersed
Cmetu02g0865 Cmetu-Chr2:7898240 Cmetu09g0362 Cmetu-Chr9:17585457 4.70E-33 dispersed
Cmetu04g0575 Cmetu-Chr4:4084994 Cmetu09g0362 Cmetu-Chr9:17585457 9.20E-18 dispersed
Cmetu04g1495 Cmetu-Chr4:8159351 Cmetu09g0362 Cmetu-Chr9:17585457 4.10E-17 dispersed
Cmetu04g2215 Cmetu-Chr4:4086314 Cmetu09g0362 Cmetu-Chr9:17585457 1.80E-39 dispersed
Cmetu06g0431 Cmetu-Chr6:8028872 Cmetu09g0362 Cmetu-Chr9:17585457 2.10E-20 dispersed
Cmetu07g0147 Cmetu-Chr7:23379390 Cmetu09g0362 Cmetu-Chr9:17585457 5.00E-30 dispersed
Cmetu09g0362 Cmetu-Chr9:17585457 Cmetu10g0768 Cmetu-Chr10:21758214 4.90E-108 dispersed
Cmetu09g0362 Cmetu-Chr9:17585457 Cmetu08g1476 Cmetu-Chr8:16562102 8.50E-92 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0768 . 112 281 IQD Protein Family AT3G09710 58.2 7.1e-51 198.7
Cmetu09g0362 . 1 470 IQD Protein Family AT3G52290 53.3 3.8e-99 359.0
Cmetu02g0865 . 1 408 IQD Protein Family AT3G22190 57.1 2.2e-96 349.7
Cmetu07g0147 . 1 438 IQD Protein Family AT2G26180 60.2 2.3e-117 419.5
Cmetu07g1332 . 40 216 IQD Protein Family AT2G33990 55.0 5.4e-48 188.3
Cmetu07g1332 . 43 216 IQD Protein Family AT3G15050 63.3 9.0e-56 214.2
Cmetu11g0481 . 1 511 IQD Protein Family AT4G00820 50.6 5.9e-110 395.2
Cmetu06g1191 . 1 467 IQD Protein Family AT4G00820 50.3 6.9e-103 371.7
Cmetu02g1708 . 1 375 IQD Protein Family AT3G16490 50.1 1.9e-62 236.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40