Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0373 ATGAGGGAAGTTTCAGAAAAAAGTTCAATTATATTATTGTGTGTGTTGTGCATGATACTTCTATTCCAATTTTGTTTTTCCATAACTTGCATCCAAACTGAGCTTGAAGCTCTTCTTCAATTCAAGAGAAGTTTTGATGATCCTTATCATCGCTTGGCTTCATGGAATGGAGCAGATTGTTGTAATTGGAATGGAGTTGGCTGCAATCAAACTACTCGACATGTTACTATGATTGATCTTCGAAGTGATATTAATCAGGTCGGCTTCTACTCATTACCTTTATATAGCAATTCCATTGACTCTAGTTTGTTAGAGTTCAAATACTTAAATTACTTGGATTTAAGTGGGAATCACTTCAACTATACTCAAATCCCAAAGTTTTCAGGTTCAATGGTTGAATTAACATATCTTAATCTTTCTTTTGCATTATTTTCTGGAAAATTTCCTCTTCATTTAGGAAATCTTACTAAATTGGTTGTTCTTGATTTATCATTTAATTGGCCGGAAACCAATGGTGATGTTGAATGGATATCTCACCTTTCATCCTTACAGTTCCTTGGCTTGACTGGAATTGACTTTTCGAAGACATCTAATTTGATGCAAGTGCTAACTTCTTTTCCTTTCTTGGTGTCCTTGAGATTGAATTATTGTAATCTTCAAAACATCCACTTCTCTTTGATTTCCCCGAATTATTCTTCATTTCTTAGTAGAGTTCAACTTTTAGATTTATCTTACAATAAGCTAAGCGGTTCAATTCCTAAGGCTTTTCAAAATATGACTTCCTTGGAATTCTTATACCTTTCAAGAAATAAGTTCACTGTTATTGAAGGCGGACTTTCTTCTTTCATTAAAAACAATTGTGGTCTAAAAGTAATTAATTTATCGATGAACGAAAATTTTGGTGGAGATGTGTTTGGAAGTAGTTATGAGAATGAATTTATGGGTTGCAACAATGGATATGATCTTCAAGTGCTTCAATTAAGCGATACATCTATGAAAACTAGATTCCCAGTAGATTGGTTAGAAAAGTTCAAAAACTTGAAGACCATTGATCTTTCATATAGTAAGTTACATGGTTCAATTCCAACTTCACTTGGAAATTTATCCGGCATTGAATATTTAGATCTTTCAAACAATGCTTTAACTGGAGAAATTCCAACCTCATTTGGAAGATTATTGAATTTGAAGGTATTAGACCTATCAAGCAACTCACTCAAAGGTGTTCTTACAGAAGCTCATTTTGTGAATCTTTCAAAGTTGCATACTTTATACTTAAGCTACAATGAGCTTATTTCATTGGAAATGGAATCTAATTGGATTCCTCCATTTCAATTAAAAAAACTTGATATAGGTTCCTGTATTGGTAGTTATGGAAATGAGTTCCCTCAATGGCTTCAAACGCAAAAAACACTTGATGAATTGTGGTTATCCAACACAAATCTCTCAATTAGTTGTTTACCAACATGGTTCACACCACAAAATCTCACCACTTTGGATCTTTCCCATAATCAAGTAGTTGGACCAATTTTTAACAGCATTGCCGATCAAATGCCCAGACTGACACATTTGTTTCTCAATGATAACTTTTTCAATGATTCATTACCACTCGTGCTTTGCAAATTGAAAAGTTTGTTTACTTTGGATCTTTCAAATAATAGGCTATCTAGGATAGTTCATGGCTGCTTGTTTACTTTAAACTTGGTTCTTTTGGATTTATCGTCCAATGACTTCTCAGGGACGTTTCCATATTCACATGCAAATCCTTCTCTTATTTATGAACTATTCTTAAGAAACAATAACTTTGAGGGATCCATGCCGACTGTATTGAAGAATTCCAAAAATTTGAAAATTTTAGATCTGGAAGGAAACAAATTCTCTGGAAACATACCTAGATGGGTAGGAGATAATCTTCAAAGTTTGCAAGTTCTAAGACTACGAAGTAATTTGTTCAATGGTACTATTCCTTCGAGCCTGTGTAACCTCCCTAATTTGCAAATTCTGGATCTTGCAAATAACCAATTGCATGGAATTATCCCCCCAAATATCAGCAATTTCGACGTAATGATAACAGGAAAGAGCATACAAGAATTCAGTCGGTTTTGTTGGCGTCGTTTATGCTTGAATACTGAAAAAAATGTGCCATCATTCAAAAACATTGACAATCTAAATGAAGAGGAAGATAAATGGGAGAAGTGGTTACTTTACATTATGATAATACTTGGGTATATAGTTGGATTTTGGGCAGTTGTTGGAAGTTTAATACTGAAGAGGAGTTGGAGATATGCTTATTTCAAGTTTTGGATATTACATCAAGGGTATCAAACATATGAACTACATCAAGTATATTAA 2349 33.59 MREVSEKSSIILLCVLCMILLFQFCFSITCIQTELEALLQFKRSFDDPYHRLASWNGADCCNWNGVGCNQTTRHVTMIDLRSDINQVGFYSLPLYSNSIDSSLLEFKYLNYLDLSGNHFNYTQIPKFSGSMVELTYLNLSFALFSGKFPLHLGNLTKLVVLDLSFNWPETNGDVEWISHLSSLQFLGLTGIDFSKTSNLMQVLTSFPFLVSLRLNYCNLQNIHFSLISPNYSSFLSRVQLLDLSYNKLSGSIPKAFQNMTSLEFLYLSRNKFTVIEGGLSSFIKNNCGLKVINLSMNENFGGDVFGSSYENEFMGCNNGYDLQVLQLSDTSMKTRFPVDWLEKFKNLKTIDLSYSKLHGSIPTSLGNLSGIEYLDLSNNALTGEIPTSFGRLLNLKVLDLSSNSLKGVLTEAHFVNLSKLHTLYLSYNELISLEMESNWIPPFQLKKLDIGSCIGSYGNEFPQWLQTQKTLDELWLSNTNLSISCLPTWFTPQNLTTLDLSHNQVVGPIFNSIADQMPRLTHLFLNDNFFNDSLPLVLCKLKSLFTLDLSNNRLSRIVHGCLFTLNLVLLDLSSNDFSGTFPYSHANPSLIYELFLRNNNFEGSMPTVLKNSKNLKILDLEGNKFSGNIPRWVGDNLQSLQVLRLRSNLFNGTIPSSLCNLPNLQILDLANNQLHGIIPPNISNFDVMITGKSIQEFSRFCWRRLCLNTEKNVPSFKNIDNLNEEEDKWEKWLLYIMIILGYIVGFWAVVGSLILKRSWRYAYFKFWILHQGYQTYELHQVY 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3724514 3751951 + PI0027571.1 Cmetu09g0373 365246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0373 782 FunFam Leucine-rich repeat receptor protein kinase EMS1 336 436 - -
Cmetu09g0373 782 Pfam Leucine Rich Repeat 663 685 IPR001611 GO:0005515
Cmetu09g0373 782 SMART LRR_sd22_2 259 281 - -
Cmetu09g0373 782 SMART LRR_sd22_2 612 639 - -
Cmetu09g0373 782 SMART LRR_sd22_2 661 687 - -
Cmetu09g0373 782 SMART LRR_sd22_2 492 515 - -
Cmetu09g0373 782 SMART LRR_sd22_2 344 370 - -
Cmetu09g0373 782 SMART LRR_sd22_2 392 419 - -
Cmetu09g0373 782 SMART LRR_sd22_2 541 560 - -
Cmetu09g0373 782 SUPERFAMILY L domain-like 30 298 - -
Cmetu09g0373 782 PANTHER LRR RECEPTOR-LIKE KINASE 344 695 - -
Cmetu09g0373 782 Gene3D Ribonuclease Inhibitor 204 307 IPR032675 -
Cmetu09g0373 782 Gene3D Ribonuclease Inhibitor 29 203 IPR032675 -
Cmetu09g0373 782 SUPERFAMILY L domain-like 314 680 - -
Cmetu09g0373 782 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 442 709 - -
Cmetu09g0373 782 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Cmetu09g0373 782 Pfam Leucine rich repeat 386 430 IPR001611 GO:0005515
Cmetu09g0373 782 Pfam Leucine rich repeat 218 272 IPR001611 GO:0005515
Cmetu09g0373 782 Gene3D Ribonuclease Inhibitor 413 724 IPR032675 -
Cmetu09g0373 782 ProSiteProfiles Leucine-rich repeat profile. 419 440 IPR001611 GO:0005515
Cmetu09g0373 782 Gene3D Ribonuclease Inhibitor 308 412 IPR032675 -
Cmetu09g0373 782 SMART LRR_typ_2 206 229 IPR003591 -
Cmetu09g0373 782 SMART LRR_typ_2 417 438 IPR003591 -
Cmetu09g0373 782 SMART LRR_typ_2 637 660 IPR003591 -
Cmetu09g0373 782 SMART LRR_typ_2 368 391 IPR003591 -
Cmetu09g0373 782 SMART LRR_typ_2 541 564 IPR003591 -
Cmetu09g0373 782 SMART LRR_typ_2 661 685 IPR003591 -
Cmetu09g0373 782 SMART LRR_typ_2 517 540 IPR003591 -
Cmetu09g0373 782 SMART LRR_typ_2 392 413 IPR003591 -
Cmetu09g0373 782 SMART LRR_typ_2 259 282 IPR003591 -
Cmetu09g0373 782 SMART LRR_typ_2 235 258 IPR003591 -
Cmetu09g0373 782 PRINTS Leucine-rich repeat signature 395 408 - -
Cmetu09g0373 782 PRINTS Leucine-rich repeat signature 661 674 - -
Cmetu09g0373 782 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Cmetu09g0373 782 ProSiteProfiles Leucine-rich repeat profile. 543 564 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0373 K13466 - - csv:101219648 1025.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu09g0373 Cmetu-Chr9:3724514 Cmetu09g0420 Cmetu-Chr9:3708535 3.80E-166 dispersed
Cmetu09g0289 Cmetu-Chr9:3710738 Cmetu09g0373 Cmetu-Chr9:3724514 3.70E-12 proximal
Cmetu09g0373 Cmetu-Chr9:3724514 Cmetu09g0421 Cmetu-Chr9:3756284 1.40E-165 tandem
Cmetu09g1951 Cmetu-Chr9:3717938 Cmetu09g0373 Cmetu-Chr9:3724514 4.40E-114 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g822 . . . . . . . . . . . . . . Sed01g3718 . . Bhi01g01562 Tan01g0804 Cmetu09g0373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143