Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0491 ATGTCCTTGCCGGATATGGTTGATGTTGCTGATAAATTAGCCTATTTCCAAGCGATTACAGGCTTAGAAGATCCCGAAATCTGCACCGAAATCCTTGCCGCTCACGGTTGGGACCTCGAATTAGCCGTTTCTTCATTTACTGGCACCAATTCGGAATCCTCTGTTTCTGCCGCTGCCGATGGTGGTGGTGGTGGTAGGGATGCCCATTTTGACCCACGGACGCGGGAAATCCTTGATAGACCGGAACAGCAAGAAAATGCAGCTCCGGCTCCGAGTTTGGCTTGGAAAATCATAACGCTTCCGATTTCTGTGATTTCTGGTAGTTTAGGGCTTGTTTCGGGTGCTGTTGGTCTTGGATTATGGGCTGCTGGTGGTATTCTTTCGTATTCTCTTGGTGTGATAGGTTTTGGGTCTGGTTCTGGTCGGAATGCTGAGTCTTCGGCTCGGTTGGTTTCTGTATCTGCTGCAGCGTCGGAGGCTATTGATTTTGTGTCGGCGTTTGAGAGGGATTATGGGATGATTAAGCCGAGTTTTGTTGGGGAAGGGTTCATGGACGCCTTGCAGCGTTCGAGAAACGCGTTTAAGCTCTTGTTTGTTTACTTGCACTCTCCTGATCATCCGGATACGCCATTGTTCTGTGAGAGGACCTTGTGTTCGGAGACCGTTGCTGCGTTTGTGAATGAGAATTTTGTTTCGTGGGGAGGGAGTATTCGCGCTAGTGAAGGTTTTAAGATGAGTAATAGCTTGAAAGCTTCAAGATATCCTTTTTGTGCTGTGGTTATGGCTGCTACAAATCAGAGGATTGCACTGCTGCAGCAGGTTGAGGGGCCAAAAACTGCTGAAGAAATGCTAGTGATTCTACAGAGAGTTCTTGAAGAAAGTGCTCCTGTTCTGGTTTCGGCCAGACTTGATGCAGAAGAAAGAAGAAATAACATGCGATTGAGAGAGGAACAAGATGCTGCTTACAGAGCAGCCCTTGAAGCCGATCAAGCCAGGGAACGACAAAGAAGGGAGGAGCAAGAGCGCCTTGAAAGGGAAGCTGCTGAAGCCGAGAGGAAGAGGAAAGAGGAAGAAGAGGCTCGTGAGAGAGCAGCTCGTGAAGCCGCAGAAAGAGAGGCTGCTTTAGCTAGAATGCGGCAGGAGAAAGCAATGTCACTTGGTGCTGAACCAGAAAAAGGACCTAATGTTACACAAGTGTTGGTGCGGTTCCCTACTGGGGAACGTAAGGAACGGAGGTTTCACAGTACCGCTTCGATCCAAACTCTCTACGATTACGTTGATTCCTTGGGTTGTTTGGAGGTTGATAGTTATAATCTGGTATCAAACTTCCCTCGAGTTGTTTATGGTGCTGATAAGCTGACTTTGTCCTTGAAAGAAGCTGGACTGCATCCTCAGGCCAGTCTTTTTGTGGACCTTACCTCATGA 1425 48.14 MSLPDMVDVADKLAYFQAITGLEDPEICTEILAAHGWDLELAVSSFTGTNSESSVSAAADGGGGGRDAHFDPRTREILDRPEQQENAAPAPSLAWKIITLPISVISGSLGLVSGAVGLGLWAAGGILSYSLGVIGFGSGSGRNAESSARLVSVSAAASEAIDFVSAFERDYGMIKPSFVGEGFMDALQRSRNAFKLLFVYLHSPDHPDTPLFCERTLCSETVAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMAATNQRIALLQQVEGPKTAEEMLVILQRVLEESAPVLVSARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKRKEEEEARERAAREAAEREAALARMRQEKAMSLGAEPEKGPNVTQVLVRFPTGERKERRFHSTASIQTLYDYVDSLGCLEVDSYNLVSNFPRVVYGADKLTLSLKEAGLHPQASLFVDLTS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1211666 1216849 - PI0018582.1 Cmetu09g0491 365364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0491 474 SMART 45neu3 162 288 IPR006577 -
Cmetu09g0491 474 Pfam UBA-like domain 11 50 - -
Cmetu09g0491 474 Pfam UBX domain 392 471 IPR001012 GO:0005515
Cmetu09g0491 474 MobiDBLite consensus disorder prediction 328 379 - -
Cmetu09g0491 474 SUPERFAMILY Ubiquitin-like 355 470 IPR029071 -
Cmetu09g0491 474 Gene3D Glutaredoxin 146 297 - -
Cmetu09g0491 474 SMART ubx_3 390 472 IPR001012 GO:0005515
Cmetu09g0491 474 Gene3D - 7 56 - -
Cmetu09g0491 474 SUPERFAMILY Thioredoxin-like 157 301 IPR036249 -
Cmetu09g0491 474 MobiDBLite consensus disorder prediction 328 378 - -
Cmetu09g0491 474 CDD UAS 178 293 - -
Cmetu09g0491 474 PANTHER FAS-ASSOCIATED PROTEIN 15 471 - -
Cmetu09g0491 474 Coils Coil 323 381 - -
Cmetu09g0491 474 Gene3D - 395 473 - -
Cmetu09g0491 474 ProSiteProfiles UBX domain profile. 392 470 IPR001012 GO:0005515
Cmetu09g0491 474 CDD UBA_FAF 16 47 - -
Cmetu09g0491 474 CDD UBX 399 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0491 K18726 - - csv:101203982 726.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu09g0491 Cmetu-Chr9:1211666 Cmetu12g0485 Cmetu-Chr12:2557218 8.70E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37