Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0635 ATGGGTTTTCGTCGATCTCTCAGTTCCCTCCAAAGATTATTTCCAACAAGATCTTTCCAGTATGCATCAGCAAGATCAGTTTCTTGTTCAAAAACAATCACTAGAAATCAAACTTCAATCTGCATTTCATCTCGCTGTAATGAGCATTCAACTTGGCTTATTCCGAATCGCAATTACGCCTCTCACCATTCCACCCATCATGGTATCGAGCACAGCAAGCAGGATTCGGAGGCTGGCAAAAAATCTATCATGGAAAGTGCTGAAATCGCCCAGGATGCTGAAAAGTTTTGTAAGTTAATATCAAAAAACCCCAATTCTTGCATTGAATCGTTGCTTGATGGTGCTCCAATGGAGATATCGCCCGCTCTGGTTGTGGAGGTGTTGAAGAAGCTGAGCAATGCAGGGTTTCTTGCACTTTCGTTCTTCAGGTGGGCAGAGAAGCAGAAAGGCTTCAAACACACTACAGAAAGCTACAACTGGTTAATTGAATCATTGGGTAAGATCAAACAGTTTAATGTGATTTGGAATTTGGTGAGTGATATGAAACGCAAAGGAATTTTAAGTAGAGAAACATTTGCTTTAATATCTCGGCGATATGCCCGAGCTAGAAAAGTTAAGGAAGCAATCGATTCGTTTGAGAAGATGGAGAAGTTTGGGTTTCAACTGGGAGTATCAGATTTCAATAGATTAATTGACACTCTAAGCAAATCCAGAAACGTTAAGAAAGCACAAGAGGTGTTTGATAAAATGAAGCATAGTAGGTTCAAGCCTGATATCAAGTCCTACACGATTCTTTTAGAAGGATGGGGTCAGGAACAGAACTTGTTGAAGTTGAATGAGGTTTATAGGGAGATGAGAGACGACGGATTCGAACCCGATGTTGTTACTTTCGGTATTATTATCAATGCACATTGCAAGGCAAGGAAGTATGATGAAGCAATTCGGTTGTTTCATGAAATGAAAGCAAAGAATGTCAAGCCATCACCTCATGTGTTCTGTACCTTAATCAATGGTTTGGGTTCTGAGAAGAGATTGAAAGAAGCTCTAGAGTTTTTCGAACAGTTGAAGTTAAGCGGCTTTGCTCCGGAGGCACCGACTTATAATACTGTTGTGGGGGCTTACTGTTGGTCAATGAAGATGGCGGATGCATATAGGACGGTAGACGAAATGAGGAAATCCGGCGTTGGTCCTAACTCGAGGACATATGATATCATACTACATCACTTGATAAAGGGTAGGAGACTAAAGGAAGCTGATTCTGTTTTCCAGAGAATGAGTAGGGAGCCTGGGTGTGAACCAACTGTGAGTACATATGAAATTATGGTAAGAATGTTTTGCAACGAAGAAAGAGTGGATATGGCGATTCGGATTTGGGATGAAATGAAGGCTAAAGGAGTTCTTCCCGGAATGCACATGTTCTCAACGTTGATTAATTGCTTGTGCCATGAGAACAAGTTGGAGGATGCTTGCAAGTACTTTCAAGAGATGTTGGATGTCGGTATTCGGCCGCCAGCGACCATGTTTAGCAATTTGAAACAGGCTCTTCTTGACGATGGTAGGAAGGATACTGCTTTACTTCTGGCTAAGAAGATCGAAAAACTGAGAAAGGCGCGGTTGTTTGGGTGA 1626 41.7 MGFRRSLSSLQRLFPTRSFQYASARSVSCSKTITRNQTSICISSRCNEHSTWLIPNRNYASHHSTHHGIEHSKQDSEAGKKSIMESAEIAQDAEKFCKLISKNPNSCIESLLDGAPMEISPALVVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNWLIESLGKIKQFNVIWNLVSDMKRKGILSRETFALISRRYARARKVKEAIDSFEKMEKFGFQLGVSDFNRLIDTLSKSRNVKKAQEVFDKMKHSRFKPDIKSYTILLEGWGQEQNLLKLNEVYREMRDDGFEPDVVTFGIIINAHCKARKYDEAIRLFHEMKAKNVKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNTVVGAYCWSMKMADAYRTVDEMRKSGVGPNSRTYDIILHHLIKGRRLKEADSVFQRMSREPGCEPTVSTYEIMVRMFCNEERVDMAIRIWDEMKAKGVLPGMHMFSTLINCLCHENKLEDACKYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTALLLAKKIEKLRKARLFG 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5033438 5036298 - PI0023841.1 Cmetu09g0635 365508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0635 541 Pfam PPR repeat 464 496 IPR002885 -
Cmetu09g0635 541 Pfam PPR repeat 430 462 IPR002885 -
Cmetu09g0635 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 433 IPR002885 -
Cmetu09g0635 541 Gene3D Tetratricopeptide repeat domain 94 286 IPR011990 GO:0005515
Cmetu09g0635 541 Gene3D Tetratricopeptide repeat domain 287 358 IPR011990 GO:0005515
Cmetu09g0635 541 Pfam PPR repeat 199 220 IPR002885 -
Cmetu09g0635 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Cmetu09g0635 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Cmetu09g0635 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Cmetu09g0635 541 Pfam PPR repeat family 292 339 IPR002885 -
Cmetu09g0635 541 Pfam PPR repeat family 366 410 IPR002885 -
Cmetu09g0635 541 Pfam PPR repeat family 227 268 IPR002885 -
Cmetu09g0635 541 NCBIfam pentatricopeptide repeat 437 468 IPR002885 -
Cmetu09g0635 541 NCBIfam pentatricopeptide repeat 401 435 IPR002885 -
Cmetu09g0635 541 NCBIfam pentatricopeptide repeat 472 503 IPR002885 -
Cmetu09g0635 541 NCBIfam pentatricopeptide repeat 366 398 IPR002885 -
Cmetu09g0635 541 NCBIfam pentatricopeptide repeat 227 259 IPR002885 -
Cmetu09g0635 541 NCBIfam pentatricopeptide repeat 261 294 IPR002885 -
Cmetu09g0635 541 NCBIfam pentatricopeptide repeat 331 362 IPR002885 -
Cmetu09g0635 541 NCBIfam pentatricopeptide repeat 295 328 IPR002885 -
Cmetu09g0635 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Cmetu09g0635 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Cmetu09g0635 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Cmetu09g0635 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Cmetu09g0635 541 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 191 527 - -
Cmetu09g0635 541 SUPERFAMILY HCP-like 199 355 - -
Cmetu09g0635 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Cmetu09g0635 541 Gene3D Tetratricopeptide repeat domain 378 538 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0635 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0513 Cmetu-Chr3:11939752 Cmetu09g0635 Cmetu-Chr9:5033438 8.70E-28 dispersed
Cmetu03g1308 Cmetu-Chr3:7414154 Cmetu09g0635 Cmetu-Chr9:5033438 7.50E-20 dispersed
Cmetu04g2880 Cmetu-Chr4:5850497 Cmetu09g0635 Cmetu-Chr9:5033438 1.60E-18 dispersed
Cmetu06g1066 Cmetu-Chr6:431365 Cmetu09g0635 Cmetu-Chr9:5033438 2.20E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012295 1 4 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29