Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmetu09g0673 | ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACGCTGACTCCGATACTCCGACAAAGATCCCACCGTCTTGCACCAACGGCGTTCTCAAGCGCCACCACCACAATCACCATCATCACCGCCCACCCTCCTCCACGGTTGTTGTTTCTTACAAAGAATGTCTCAAAAATCACGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCGCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGTTGTCACCGGAACTTCCACCGCCGTGATCCTGAAGATCCAATTTCAACCTTAGCTATCAATACAGCGCCAACTCATGTTATTGAGTATCAACCTCACCACCGTCACCACCCACCACCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCGGCATCTCCTCCGCCGATCTCGTCTTCCTATTACCCATCTGCGCCGCATATGTTATTAGCGCTTTCCGCTGGGTTGTCGGGTCGTCCACCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGTAATGAACAGAAGGAGAAAATGCTGGATTTCGCCGAACGGGTGGGATGGAAAATGCAGAAACGAGATGAAGATTTGGTTCGCGATTTTTGTAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCTGATTCCAATGGCGACACAACCGCCACCGCCACCGTCGCCACCGCCATCGCCACCGTCAACAATCATGAAGATGAACCAGATGGGGGCTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCTTCTTGA | 915 | 51.04 | MDLAPAPITTSSNNTKSPDADSDTPTKIPPSCTNGVLKRHHHNHHHHRPPSSTVVVSYKECLKNHAATLGAHALDGCGEFMPSPSATPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGDTTATATVATAIATVNNHEDEPDGGLHMHIGSNGSSSSS | 304 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 19790625 | 19792362 | - | PI0006225.1 | Cmetu09g0673 | 365546 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmetu09g0673 | 304 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Cmetu09g0673 | 304 | SUPERFAMILY | Homeodomain-like | 185 | 259 | IPR009057 | - | |
| Cmetu09g0673 | 304 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 58 | 109 | IPR006456 | - | |
| Cmetu09g0673 | 304 | Gene3D | - | 183 | 259 | - | - | |
| Cmetu09g0673 | 304 | MobiDBLite | consensus disorder prediction | 178 | 200 | - | - | |
| Cmetu09g0673 | 304 | MobiDBLite | consensus disorder prediction | 130 | 159 | - | - | |
| Cmetu09g0673 | 304 | MobiDBLite | consensus disorder prediction | 282 | 304 | - | - | |
| Cmetu09g0673 | 304 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 28 | 256 | - | - | |
| Cmetu09g0673 | 304 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Cmetu09g0673 | 304 | MobiDBLite | consensus disorder prediction | 173 | 200 | - | - | |
| Cmetu09g0673 | 304 | Pfam | ZF-HD protein dimerisation region | 56 | 110 | IPR006456 | - | |
| Cmetu09g0673 | 304 | NCBIfam | homeobox domain, ZF-HD class | 198 | 255 | IPR006455 | - | |
| Cmetu09g0673 | 304 | FunFam | Zinc-finger homeodomain protein 2 | 185 | 259 | - | - | |
| Cmetu09g0673 | 304 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 58 | 109 | IPR006456 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmetu09g0673 | - | - | - | - | 0.0 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmetu04g0691 | Cmetu-Chr4:8701566 | Cmetu09g0673 | Cmetu-Chr9:19790625 | 5.30E-68 | dispersed | |
| Cmetu09g0673 | Cmetu-Chr9:19790625 | Cmetu10g0522 | Cmetu-Chr10:19375279 | 2.70E-43 | dispersed | |
| Cmetu09g1945 | Cmetu-Chr9:19775919 | Cmetu09g0673 | Cmetu-Chr9:19790625 | 2.90E-12 | tandem |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cmetu03g1591 | . | 46 | 237 | ZF-HD Transcription Factor Family | AT5G65410 | 54.4 | 1.9e-43 | 173.3 | |
| Cmetu08g0546 | . | 26 | 220 | ZF-HD Transcription Factor Family | AT4G24660 | 50.8 | 1.5e-46 | 183.3 | |
| Cmetu10g1264 | . | 76 | 285 | ZF-HD Transcription Factor Family | AT2G02540 | 56.5 | 1.2e-51 | 200.7 | |
| Cmetu10g1264 | . | 73 | 288 | ZF-HD Transcription Factor Family | AT1G14440 | 54.0 | 2.7e-54 | 209.5 | |
| Cmetu04g0691 | . | 12 | 269 | ZF-HD Transcription Factor Family | AT5G15210 | 54.1 | 1.1e-48 | 190.7 | |
| Cmetu09g0673 | . | 6 | 254 | ZF-HD Transcription Factor Family | AT5G15210 | 51.4 | 3.0e-46 | 182.6 | |
| Cmetu04g0691 | . | 22 | 264 | ZF-HD Transcription Factor Family | AT3G28920 | 60.7 | 1.3e-56 | 217.2 | |
| Cmetu09g0673 | . | 16 | 256 | ZF-HD Transcription Factor Family | AT3G28920 | 61.9 | 1.1e-55 | 214.2 | |
| Cmetu04g0691 | . | 30 | 262 | ZF-HD Transcription Factor Family | AT5G39760 | 63.9 | 1.6e-49 | 193.7 | |
| Cmetu09g0673 | . | 24 | 260 | ZF-HD Transcription Factor Family | AT5G39760 | 57.1 | 3.1e-48 | 189.5 | |
| Cmetu10g0522 | . | 5 | 192 | ZF-HD Transcription Factor Family | AT1G69600 | 51.9 | 2.5e-47 | 186.0 | |
| Cmetu09g0673 | . | 56 | 257 | ZF-HD Transcription Factor Family | AT1G69600 | 51.5 | 3.2e-47 | 185.7 | |
| Cmetu10g1264 | . | 76 | 285 | ZF-HD Transcription Factor Family | AT2G02540 | 56.5 | 1.2e-51 | 200.7 | |
| Cmetu08g0546 | . | 26 | 220 | ZF-HD Transcription Factor Family | AT4G24660 | 50.8 | 1.5e-46 | 183.3 | |
| Cmetu04g0691 | . | 30 | 262 | ZF-HD Transcription Factor Family | AT5G39760 | 63.9 | 1.6e-49 | 193.7 | |
| Cmetu09g0673 | . | 24 | 260 | ZF-HD Transcription Factor Family | AT5G39760 | 57.1 | 3.1e-48 | 189.5 | |
| Cmetu03g1591 | . | 46 | 237 | ZF-HD Transcription Factor Family | AT5G65410 | 54.4 | 1.9e-43 | 173.3 | |
| Cmetu10g0522 | . | 5 | 192 | ZF-HD Transcription Factor Family | AT1G69600 | 51.9 | 2.5e-47 | 186.0 | |
| Cmetu09g0673 | . | 56 | 257 | ZF-HD Transcription Factor Family | AT1G69600 | 51.5 | 3.2e-47 | 185.7 | |
| Cmetu04g0691 | . | 12 | 269 | ZF-HD Transcription Factor Family | AT5G15210 | 54.1 | 1.1e-48 | 190.7 | |
| Cmetu09g0673 | . | 6 | 254 | ZF-HD Transcription Factor Family | AT5G15210 | 51.4 | 3.0e-46 | 182.6 | |
| Cmetu10g1264 | . | 73 | 288 | ZF-HD Transcription Factor Family | AT1G14440 | 54.0 | 2.7e-54 | 209.5 | |
| Cmetu04g0691 | . | 22 | 264 | ZF-HD Transcription Factor Family | AT3G28920 | 60.7 | 1.3e-56 | 217.2 | |
| Cmetu09g0673 | . | 16 | 256 | ZF-HD Transcription Factor Family | AT3G28920 | 61.9 | 1.1e-55 | 214.2 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0001346 | 3 | 2 | 3 | 3 | 3 | 2 | 4 | 2 | 2 | 2 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 4 | 4 | 2 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 3 | 2 | 1 | 74 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 8506 | PF04770 | ZF-HD_dimer | 4.90E-28 | No_clan | Cmetu | TF |