Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0673 ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACGCTGACTCCGATACTCCGACAAAGATCCCACCGTCTTGCACCAACGGCGTTCTCAAGCGCCACCACCACAATCACCATCATCACCGCCCACCCTCCTCCACGGTTGTTGTTTCTTACAAAGAATGTCTCAAAAATCACGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCGCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGTTGTCACCGGAACTTCCACCGCCGTGATCCTGAAGATCCAATTTCAACCTTAGCTATCAATACAGCGCCAACTCATGTTATTGAGTATCAACCTCACCACCGTCACCACCCACCACCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCGGCATCTCCTCCGCCGATCTCGTCTTCCTATTACCCATCTGCGCCGCATATGTTATTAGCGCTTTCCGCTGGGTTGTCGGGTCGTCCACCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGTAATGAACAGAAGGAGAAAATGCTGGATTTCGCCGAACGGGTGGGATGGAAAATGCAGAAACGAGATGAAGATTTGGTTCGCGATTTTTGTAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCTGATTCCAATGGCGACACAACCGCCACCGCCACCGTCGCCACCGCCATCGCCACCGTCAACAATCATGAAGATGAACCAGATGGGGGCTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 915 51.04 MDLAPAPITTSSNNTKSPDADSDTPTKIPPSCTNGVLKRHHHNHHHHRPPSSTVVVSYKECLKNHAATLGAHALDGCGEFMPSPSATPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGDTTATATVATAIATVNNHEDEPDGGLHMHIGSNGSSSSS 304
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 19790625 19792362 - PI0006225.1 Cmetu09g0673 365546

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0673 304 MobiDBLite consensus disorder prediction 1 52 - -
Cmetu09g0673 304 SUPERFAMILY Homeodomain-like 185 259 IPR009057 -
Cmetu09g0673 304 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Cmetu09g0673 304 Gene3D - 183 259 - -
Cmetu09g0673 304 MobiDBLite consensus disorder prediction 178 200 - -
Cmetu09g0673 304 MobiDBLite consensus disorder prediction 130 159 - -
Cmetu09g0673 304 MobiDBLite consensus disorder prediction 282 304 - -
Cmetu09g0673 304 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 28 256 - -
Cmetu09g0673 304 MobiDBLite consensus disorder prediction 1 31 - -
Cmetu09g0673 304 MobiDBLite consensus disorder prediction 173 200 - -
Cmetu09g0673 304 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Cmetu09g0673 304 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cmetu09g0673 304 FunFam Zinc-finger homeodomain protein 2 185 259 - -
Cmetu09g0673 304 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0673 - - - - 0.0
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0691 Cmetu-Chr4:8701566 Cmetu09g0673 Cmetu-Chr9:19790625 5.30E-68 dispersed
Cmetu09g0673 Cmetu-Chr9:19790625 Cmetu10g0522 Cmetu-Chr10:19375279 2.70E-43 dispersed
Cmetu09g1945 Cmetu-Chr9:19775919 Cmetu09g0673 Cmetu-Chr9:19790625 2.90E-12 tandem
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8506 PF04770 ZF-HD_dimer 4.90E-28 No_clan Cmetu TF