Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0739 ATGGCTCCCAGCTCTGTTGTTGTCACAATTGAGAAGCATAATAGCTTCCCTTTAGTGGAAATCAATGGCTCTGAATCTTTGCTACTTCCTGAGAAGCAAAAGGCTGCTAGTCCTAAGCAACTTACATGGGTTCTTCTTCTTAAAGCTCATAGAGCTCTGTTTTTCTTCTCATGGTTAGCTATGACTGTGAAGGCTGTTTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGGTATTAATGAAAATGATTCTAAAAACCGTGGGAAGTTGTATAGATTCATCAAGGGGTTTCTTGTTATTTCTATTGTGGGTTTGATTTTTGAAGTTGTTGCGCATTTGAAGAAGTGGAATCTAGGAATGATTCAGCCATTGGAGGTTGAAGTTCATGGGATTCTTCAATGGTTTTATGTTTCTTGGCTTTCATTTCGTGTTGATTACATTGCTCCATTGGTATTAATGCTTTCGAAATTCTGCATTGTTTTGTTCTTGATTCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGGTGCTTTTGGATTAAGTATAAGAAAATCAAACCCATGATTCAAGATGATGCTTATGATTTGGAAGATGCTTCAACTTTTCCTATGGTTCTTGTTCAAATCCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCAATTGCTGCTGCTTGTGAGCTTGATTGGCCAAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCGGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGATTGATTCGAACTGGATACAAAGCTGGGAATCTCAAGTCCGCCATGGCTTGTGATTATGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCAGATTTCCTTAAACTAACTATTCCTCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTTCAAGCTCGTTGGGCGTTTGTTAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGAGTTTTCCTGAATTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAACGAAAGCACTTGAAGAATCCGGTGGCTGGCTCGAGCGAACAACCGTGGAAGATATGGATATTGCTGTTCGAGCTCACTTGAAGGGATGGAAATTCATCTTTCTTAATGATGTTAAAGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTATAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTTCCTTCTATCATTACTTCAAAGATATCAATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCTTGAGAAAACTCATACTTCCATTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTAACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTATATCCCAGTTTTCATGTCCTTCCTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAAAACACCATGTCCGTCACGAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTCGGAAGTTCATATGAATGGGTAGTGACGAAAAAGACAGGACGATCATCCGAATCCGACTTCTTAGCATTCGCAGAACGAGAGTCTAAAACATCGAACGATGAGAAGATTTTAAGGAGACATTCGGAGTCGGGGCTCGAGTTGTTGAGTAAATTGAACCAACAAGAGATCAAGCAAAAAGTGGTTTCCAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAACTTGCTCTTGCTTTTCTATTGCTCACTGCATCAGCTAGAAGCTTGCTGTCAGAACATGGAGTTCATTTCTATTTCTTGCTTTTTCAAGGTTTGTCATTCCTGGTGGTGGGTTTGGACTTGATTGGTGAACAAATGAACTGA 2007 39.46 MAPSSVVVTIEKHNSFPLVEINGSESLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKAVFASVKKRIAHAGINENDSKNRGKLYRFIKGFLVISIVGLIFEVVAHLKKWNLGMIQPLEVEVHGILQWFYVSWLSFRVDYIAPLVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKYKKIKPMIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSFLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNDEKILRRHSESGLELLSKLNQQEIKQKVVSKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLVVGLDLIGEQMN 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19240829 19243609 - PI0008399.1 Cmetu09g0739 365612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0739 668 FunFam probable xyloglucan glycosyltransferase 5 196 420 - -
Cmetu09g0739 668 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
Cmetu09g0739 668 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
Cmetu09g0739 668 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 128 665 - -
Cmetu09g0739 668 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0739 K20887 - - csv:101208151 1271.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0694 Cmetu-Chr4:30753336 Cmetu09g0739 Cmetu-Chr9:19240829 4.50E-264 dispersed
Cmetu08g1931 Cmetu-Chr8:17331024 Cmetu09g0739 Cmetu-Chr9:19240829 2.90E-101 dispersed
Cmetu09g0739 Cmetu-Chr9:19240829 Cmetu11g0219 Cmetu-Chr11:5198006 2.40E-108 dispersed
Cmetu09g0739 Cmetu-Chr9:19240829 Cmetu07g2267 Cmetu-Chr7:23109624 2.20E-247 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g2039 . 221 382 REM Transcription Factor Family AT1G49480 71.0 7.1e-57 217.6
Cmetu04g0694 . 1 684 REM Transcription Factor Family AT2G24630 75.9 2.5e-310 1061.2
Cmetu09g0739 . 6 668 REM Transcription Factor Family AT2G24630 69.0 2.4e-265 911.8
Cmetu07g2267 . 1 706 REM Transcription Factor Family AT2G24630 64.0 2.9e-263 904.8
Cmetu03g1896 . 5 704 REM Transcription Factor Family AT2G24630 65.5 7.0e-257 883.6
Cmetu01g2286 . 5 694 REM Transcription Factor Family AT2G24630 62.1 1.1e-246 849.7
Cmetu04g0694 . 1 684 REM Transcription Factor Family AT2G24630 75.9 2.5e-310 1061.2
Cmetu09g0739 . 6 668 REM Transcription Factor Family AT2G24630 69.0 2.4e-265 911.8
Cmetu07g2267 . 1 706 REM Transcription Factor Family AT2G24630 64.0 2.9e-263 904.8
Cmetu03g1896 . 5 704 REM Transcription Factor Family AT2G24630 65.5 7.0e-257 883.6
Cmetu01g2286 . 5 694 REM Transcription Factor Family AT2G24630 62.1 1.1e-246 849.7
Cmetu04g0694 . 1 684 REM Transcription Factor Family AT2G24630 75.9 2.5e-310 1061.2
Cmetu09g0739 . 6 668 REM Transcription Factor Family AT2G24630 69.0 2.4e-265 911.8
Cmetu07g2267 . 1 706 REM Transcription Factor Family AT2G24630 64.0 2.9e-263 904.8
Cmetu03g1896 . 5 704 REM Transcription Factor Family AT2G24630 65.5 7.0e-257 883.6
Cmetu01g2286 . 5 694 REM Transcription Factor Family AT2G24630 62.1 1.1e-246 849.7
Cmetu11g2039 . 221 382 REM Transcription Factor Family AT1G49480 71.0 7.1e-57 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33