Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0775 ATGACGAAGAATAAAACCTCGGCCCCTCCTAAAGGGGCAAAGAAGGGGAAGAATTTTCCACTCAGTAAGGACCCTTTCTTCAGTTCTGAATCAAGGAAACGAAGGAAGATTGTTGATGATGAGATTGAAAGCGGTGAGTCAGACGAGGATAATGGGTTAGTGGGTGTTGAGGATGAGGAGTTTGAGGAAGAAACTGTTGATGAGAAAAGGAAAAGAGTAGCAGTCGAATACTTGGAGAAAATTCGGGAAATTGCAAAAAGAGAAAAGGAGAGGGGTGATGAAGAGAAGGATGAGGATGAGAGTGATGATGAAGGCGAAAAAGATTCACTGGTTGCACAAATTCTTCAGCAAGAGCAACTTGAAGATAGCGGAAGGCTTCGTAGAGAAATTGCATCAAGGGTTCAGAAGCCAGTAGCTAGAGATGAATTTCAATTCTTGATTAAGCACAGACAATCTGTTACAGCTGTTGTTCTATCTGAGGATGATTTGAAGGGGTTTTCATCGTCCAAGGATGGTACCATCTTACACTGGGATGTAGAAAGTGGTAAAGGGGAAAAATATCAATGGCCTAGTGATCAAGTATTGAGATTGCATGGTGCTAAGGATCCCCAAGGTCGGGCTACAAAGCATAGTAAAGTCACTTTGTCATTAGCTGTCAGTTCTGATGGTCGATATTTAGCTAGTGGAGGCTTAGACCGCCATGTGCATATATGGGATACTCGTACACGAGAGCATATTCAGGCATTTCCTGGTCATAGAGGACCTGTTTCGTGTTTGACTTTCAGGCAAGGGACTTCAGAACTTTTTTCTGGTTCATATGATCGAACTGTCAAGATATGGAATGTGGATGACAGAGCTTATATAAATACATTGTTTGGTCACCAAAGCGAAGTATTGACTATCGATTGCCTACGGAAAGAAAGATTACTTACTGTTGGACGTGATCGGAGTATGCAATTATGGAAGGTTCCAGAGGAGTCCCGTTTAGTATTTCGTGCTCCTGCATCATCCTTAGAATGTTGCTGTTTTATAAGCAATGATGAATTCTTATCTGGATCAGATGACGGCAGTATTGAGCTTTGGACTGTAATGAAAAAGAAGCCTGTTTTTATTGTGCGAAATGCTCATTCTTCTTCATCATCTTCCACAAATTTGGAGCTGAAGGAAAATGGAGCCATCCCCAATGGTTGTATGGGAAATGGGGATGCCAATCACAATATCTCTCATAGTTTGTCAGCATATTCTTGGGTAAGTTCAGTCTCAGTATGTAGAAACAGTGATCTTGCTGCATCGGGTGCTGGCAATGGTTCTGTTCGTTTATGGGCTCTCACAAGTGATAAGAAAGATGTTCGACCATTATATGACCTCCCTCTGGTTGGGTTTGTGAACTCCTTGACCTTTGCCAACTCTGGAAGGTTTGTGGTGGCTGGAATTGGGCAGGAACCTCGTCTAGGAAGATGGGGGCGAATCCCAGCTGCTCGGAATGGAGTTGCAGTTCATCCCCTTAAGCTCTCATGA 1518 43.02 MTKNKTSAPPKGAKKGKNFPLSKDPFFSSESRKRRKIVDDEIESGESDEDNGLVGVEDEEFEEETVDEKRKRVAVEYLEKIREIAKREKERGDEEKDEDESDDEGEKDSLVAQILQQEQLEDSGRLRREIASRVQKPVARDEFQFLIKHRQSVTAVVLSEDDLKGFSSSKDGTILHWDVESGKGEKYQWPSDQVLRLHGAKDPQGRATKHSKVTLSLAVSSDGRYLASGGLDRHVHIWDTRTREHIQAFPGHRGPVSCLTFRQGTSELFSGSYDRTVKIWNVDDRAYINTLFGHQSEVLTIDCLRKERLLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWTVMKKKPVFIVRNAHSSSSSSTNLELKENGAIPNGCMGNGDANHNISHSLSAYSWVSSVSVCRNSDLAASGAGNGSVRLWALTSDKKDVRPLYDLPLVGFVNSLTFANSGRFVVAGIGQEPRLGRWGRIPAARNGVAVHPLKLS 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20972954 20979704 - PI0015399.1 Cmetu09g0775 365648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0775 505 MobiDBLite consensus disorder prediction 27 42 - -
Cmetu09g0775 505 MobiDBLite consensus disorder prediction 1 69 - -
Cmetu09g0775 505 FunFam U3 snoRNP-associated protein-like EMB2271 139 505 - -
Cmetu09g0775 505 PANTHER U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 22 503 - -
Cmetu09g0775 505 ProSitePatterns Trp-Asp (WD) repeats signature. 268 282 IPR019775 -
Cmetu09g0775 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 242 - -
Cmetu09g0775 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 290 IPR001680 GO:0005515
Cmetu09g0775 505 MobiDBLite consensus disorder prediction 86 107 - -
Cmetu09g0775 505 Pfam WD domain, G-beta repeat 331 361 IPR001680 GO:0005515
Cmetu09g0775 505 Pfam WD domain, G-beta repeat 209 239 IPR001680 GO:0005515
Cmetu09g0775 505 Pfam WD domain, G-beta repeat 408 441 IPR001680 GO:0005515
Cmetu09g0775 505 Pfam WD domain, G-beta repeat 245 281 IPR001680 GO:0005515
Cmetu09g0775 505 ProSitePatterns Trp-Asp (WD) repeats signature. 226 240 IPR019775 -
Cmetu09g0775 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 183 - -
Cmetu09g0775 505 SMART WD40_4 200 239 IPR001680 GO:0005515
Cmetu09g0775 505 SMART WD40_4 140 178 IPR001680 GO:0005515
Cmetu09g0775 505 SMART WD40_4 324 362 IPR001680 GO:0005515
Cmetu09g0775 505 SMART WD40_4 242 281 IPR001680 GO:0005515
Cmetu09g0775 505 SMART WD40_4 284 322 IPR001680 GO:0005515
Cmetu09g0775 505 SMART WD40_4 404 442 IPR001680 GO:0005515
Cmetu09g0775 505 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Cmetu09g0775 505 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Cmetu09g0775 505 PRINTS G protein beta WD-40 repeat signature 226 240 IPR020472 -
Cmetu09g0775 505 MobiDBLite consensus disorder prediction 43 64 - -
Cmetu09g0775 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 283 - -
Cmetu09g0775 505 Coils Coil 78 98 - -
Cmetu09g0775 505 SUPERFAMILY WD40 repeat-like 142 480 IPR036322 GO:0005515
Cmetu09g0775 505 Gene3D - 139 505 IPR015943 GO:0005515
Cmetu09g0775 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 248 IPR001680 GO:0005515
Cmetu09g0775 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0775 K14793 - - csv:101223179 920.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g2162 Cmetu-Chr6:20156663 Cmetu09g0775 Cmetu-Chr9:20972954 3.90E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004713 2 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 42