Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0809 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGTGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCACGGGCAGTCTTCCCTAGCATTGTCGGTCGTCCTCGTCACACCGGCGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGCGATGAAGCTCAATCCAAACGTGGTATTTTGACTCTGAAATACCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATATGGCATCACACATTCTATAACGAGCTCCGTGTTGCGCCGGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCTAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTCAACACCCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTGTATGCCAGTGGCCGAACGACTGGCATTGTGATGGACTCTGGTGATGGTGTCAGTCATACAGTCCCCATATATGAGGGTTATGCTCTTCCACACGCCATTCTTCGACTCGATCTAGCTGGCCGTGATCTTACTGATAACTTGATGAAAATCCTAACGGAGCGTGGTTATTCATTTACCACCACAGCAGAGCGTGAGATTGTGAGAGATATGAAGGAAAAGCTTTCATATATCGCGCTTGACTACGAGCAGGAACTTGAAACATCCAAAACCAGTTCATCCGTTGAAAAGAGCTATGAGTTGCCTGATGGACAGGTCATCACAATTGGTGCTGAGCGTTTTAGATGCCCAGAAGTTCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCAGGTATTCATGAAACCACATATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATCTGTATGGCAACATTGTCCTCTCCGGTGGTTCAACCATGTTTTCAGGAATCGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATATAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA 1134 46.91 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18358242 18360656 + PI0019997.1 Cmetu09g0809 365682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0809 377 Gene3D - 10 371 - -
Cmetu09g0809 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmetu09g0809 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmetu09g0809 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Cmetu09g0809 377 FunFam Actin, alpha skeletal muscle 331 377 - -
Cmetu09g0809 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Cmetu09g0809 377 FunFam Actin, muscle 182 273 - -
Cmetu09g0809 377 SMART actin_3 7 377 IPR004000 -
Cmetu09g0809 377 PANTHER ACTIN 9 370 IPR004000 -
Cmetu09g0809 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Cmetu09g0809 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cmetu09g0809 377 Pfam Actin 5 377 IPR004000 -
Cmetu09g0809 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmetu09g0809 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmetu09g0809 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmetu09g0809 377 PRINTS Actin signature 51 62 IPR004000 -
Cmetu09g0809 377 PRINTS Actin signature 238 254 IPR004000 -
Cmetu09g0809 377 PRINTS Actin signature 63 85 IPR004000 -
Cmetu09g0809 377 PRINTS Actin signature 28 37 IPR004000 -
Cmetu09g0809 377 PRINTS Actin signature 117 130 IPR004000 -
Cmetu09g0809 377 PRINTS Actin signature 142 161 IPR004000 -
Cmetu09g0809 377 Gene3D - 140 340 - -
Cmetu09g0809 377 FunFam Actin, alpha skeletal muscle 3 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0809 K10355 - - csv:101220611 744.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1459 Cmetu-Chr1:26145111 Cmetu09g0809 Cmetu-Chr9:18358242 3.10E-54 dispersed
Cmetu04g3004 Cmetu-Chr4:6348349 Cmetu09g0809 Cmetu-Chr9:18358242 4.30E-216 dispersed
Cmetu09g0809 Cmetu-Chr9:18358242 Cmetu11g0408 Cmetu-Chr11:30383063 9.90E-213 dispersed
Cmetu10g0742 Cmetu-Chr10:15970753 Cmetu09g0809 Cmetu-Chr9:18358242 1.40E-189 transposed
Cmetu08g1718 Cmetu-Chr8:16104350 Cmetu09g0809 Cmetu-Chr9:18358242 8.10E-215 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.1e-215 743.0
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.1e-215 743.0
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.2e-212 734.9
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 2.9e-212 734.6
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT2G37620 95.8 3.5e-186 647.9
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 4.0e-214 740.7
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.9e-214 740.0
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.6e-213 736.5
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 7.1e-211 729.9
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT5G59370 96.4 2.7e-186 648.3
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.8e-214 741.9
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 3.1e-214 741.1
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.4e-213 737.6
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 3.2e-211 731.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G46520 96.7 1.2e-186 649.4
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.6e-215 744.2
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.0e-214 740.7
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 3.4e-213 737.6
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.9e-213 736.1
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.9e-213 736.1
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.2e-212 734.9
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G12110 97.0 8.4e-188 653.3
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.1e-209 723.8
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.1e-209 723.8
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 5.1e-209 723.8
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.9e-208 721.8
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.9e-208 721.8
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 9.6e-208 719.5
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G18780 93.1 6.3e-183 637.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.7e-209 725.3
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.6e-209 723.4
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 3.3e-208 721.1
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.3e-208 720.7
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT1G49240 93.1 6.3e-183 637.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.7e-217 749.6
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.7e-217 749.6
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 2.4e-214 741.5
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.9e-214 740.0
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.0e-213 738.4
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 6.4e-212 733.4
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT5G09810 95.8 6.0e-186 647.1
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 8.3e-58 219.9
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 2.7e-56 214.9
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 9.5e-54 206.5
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 1.1e-57 219.5
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 6.6e-55 210.3
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT4G29350 74.0 3.3e-54 208.0
Cmetu05g1709 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 1.3e-37 152.5
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT4G29340 85.8 3.2e-65 244.6
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT4G29340 70.9 4.4e-54 207.6
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 1.6e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276