Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g0993 ATGGCGGCTTCCGTCGACAACCGCCAATTTGGCTCTCTCCAGCCACCGCTCAACGGCGTCGTTCGCTCCTTCAAATCCGGTCCTAACCACCGCTCCGACTCCCCCGTTCGTGGCTGCAACTTCCCCAATTCCAACATTAACAATCGCCTTCTCAAGAGTTCCGTGAAGATGGAACAGGAGGAAGAGGATGATGATTCGTGTAGTGAAGACGAGAACGATAACAACGAGCTTCGTGAATTGATCAAGAAGGGAAACCGTGAACTGGAACCGTCGATTGTGGATCCAAGAGATGAATGGACGGCTGATAATTGGATCGAGCGGAACCCTTCCATGGTCCGTCTCACAGGGAAGCACCCCTTCAACTCGGAGCCACCTCTCAATCGTCTGATGCACCATGGGTTCATAACCCCGGTCCCACTACACTACGTGCGTAACCACGGAGCTGTCCCTAAGGGCAACTGGAGTGACTGGACCATCGAGGTCTGTGGTCTCGTCAAACGTCCCACTAAGTTCACCATGGACCAACTGGTGAACGAGTTCCGGTTCCGGGAGTTTCCAGCGACGCTAGTGTGCGCTGGAAACCGGCGAAAGGAGCAGAACATGGTGAAAAAGAGCATCGGGTTCAACTGGGGAGCGGCGGGAGTTTCCACGTCAGTATGGCGGGGGGTCTCACTGCGTGACGTGTTGAAACGATGTGGGATTATGAGTCGGAAGAAGGGGGCGCTGAATGTGTGCTTTGAAGGGGCTGAGGATCTGCCAGGTGGCGGTGGGTCCAAGTACGGAACTAGTATCAAGAAAGAGCTGGCTATGGATCCGGCTAGGGACATCATTTTAGCGTACATGCAAAACGGAGAGGAGTTGGTACCGGACCACGGGTTTCCTGTGAGGATGATAATACCGGGATTCATCGGGGGTAGAATGGTCAAGTGGCTTAAACGCATCATCGTTACAACCAAAGAATCAGAAAATTATTACCATTTCAAGGATAATAGAGTCTTGCCTTCCCACGTAGACGCTGAGCTGGCTAACGCCGAAGCATGGTGGTACAAGCCGGAGTACATAATCAACGAGTTGAACATAAACTCAGTCATAACAACTCCCTGCCATGAGGAGATTGTGCCTATCAACTCCTGGACCACTCAGAGGCCCTACACCTTGAGAGGCTATTCTTATTCCGGTGGTGGAAAGAAGGTGACACGTGTGGAGGTGACAATGGACGGTGGAGAGACATGGCAAGTGTGCACGTTGGACCATCCAGAGAAGCCAAACAAATATGGAAAATACTGGTGCTGGTGTTTCTGGTCCTTAGAGGTGGAGGTTCTAGACTTGCTTGGCGCTAAAGAGATTGCAGTACGTGCTTGGGATGAAACTCTCAACACCCAACCTGAGAAACTCATATGGAACCTTATGGGAATGATGAACAACTGTTGGTTCAGAGTGAAAACCAACGTATGCAAACCTCACAAGGGAGAAATCGGAATCATCTTCGAACACCCAACAGTTCCCGGCAACCAATCCGGTGGATGGATGGACAGAGAGAGACATCTAGAAATGTCCACCGAATCAAACCAAACCCTAAAGAAGAGTATCTCCACTCCATTCATGAACACCGCCTCCAATACTTACTCCTTATCCGAAGTTAAAAAACACAACTCCCCACAATCCGCCTGGATCATTGTCCACGGCCATGTCTACGATTGCACACGCTTCCTCAAAGACCACCCCGGCGGCTCGGACAGTATCTTAATCAACGCCGGCACCGACTGCACAGAAGAGTTCGACGCCATCCACTCGGACAAAGCCAAGAAAATGCTGGAGGATTACCGAATCGGAGAGTTGATCACCACCGGCTACGCTTCCGACTCCTCCTCCAACTCACCTAACAACTCCACTCACGGTGCCTCCAACTTCTCCCATTTAGCGCCCATCCGGGAAGCCCCAATGGTGACAAGACGCGCGGCACTGGCCCCTAACGAAAAAATCCCCTGCAAGCTGATTTCCAAAACCGCAATCTCACACGATGTGCGTGTATTCAGATTCGAACTGCCCGGGGGTCAGGATCAGGTACTTGGGCTGCCCGTGGGCAAGCACATTTTCATATGCGCCAAAGTGGACGGCAAGCTTTGCATGAGAGCCTATACGCCCTCTAGCACCATAGACCAAATGGGCTACTTCGAATTGGTGGTCAAAGTGTACTTCAAAAACGTGCACCCCAAGTTCCCCAACGGGGGGATCATGTCACAGTTTTTGGACAACATGGAAGTGGGCTCGACGGTGGACGTTAAGGGTCCGTTGGGCCACATCGAATACACCGGACGGGGAAACTTTACGGTCCATGGGAAACCACGGTTCGCGAAGCGGCTTGCCATGCTGGCAGGTGGGACCGGAATAACTCCGATATATCAAGTTGTGCAGGCGATTTTGAAGGATCCGGAGGACGAGACGGAGATGTTTGTTGTGTATGCGAATCGGACGGAGGATGATATTTTGCTGAGGGAGGAATTGGACACGTGGGCGAAGAAGAACCAGAGATTGAAAGTATGGTACGTGGTGCAGGAGAGTATTAGAGAAGGGTGGGAATATAGCATTGGGTTTATTACGGAGGAAATAGTGAGAGAGCATCTTCCGGCAGCGGCGGAGGATACTTTGGCTTTGGTTTGTGGGCCGCCGGCGATGATTCAGTTTGCGGTGCAGCCCAATTTGGAGAAGATGAATTACGACACCAAGAATTCCATGTTGGTGTTTTGA 2748 51.56 MAASVDNRQFGSLQPPLNGVVRSFKSGPNHRSDSPVRGCNFPNSNINNRLLKSSVKMEQEEEDDDSCSEDENDNNELRELIKKGNRELEPSIVDPRDEWTADNWIERNPSMVRLTGKHPFNSEPPLNRLMHHGFITPVPLHYVRNHGAVPKGNWSDWTIEVCGLVKRPTKFTMDQLVNEFRFREFPATLVCAGNRRKEQNMVKKSIGFNWGAAGVSTSVWRGVSLRDVLKRCGIMSRKKGALNVCFEGAEDLPGGGGSKYGTSIKKELAMDPARDIILAYMQNGEELVPDHGFPVRMIIPGFIGGRMVKWLKRIIVTTKESENYYHFKDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEIVPINSWTTQRPYTLRGYSYSGGGKKVTRVEVTMDGGETWQVCTLDHPEKPNKYGKYWCWCFWSLEVEVLDLLGAKEIAVRAWDETLNTQPEKLIWNLMGMMNNCWFRVKTNVCKPHKGEIGIIFEHPTVPGNQSGGWMDRERHLEMSTESNQTLKKSISTPFMNTASNTYSLSEVKKHNSPQSAWIIVHGHVYDCTRFLKDHPGGSDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITTGYASDSSSNSPNNSTHGASNFSHLAPIREAPMVTRRAALAPNEKIPCKLISKTAISHDVRVFRFELPGGQDQVLGLPVGKHIFICAKVDGKLCMRAYTPSSTIDQMGYFELVVKVYFKNVHPKFPNGGIMSQFLDNMEVGSTVDVKGPLGHIEYTGRGNFTVHGKPRFAKRLAMLAGGTGITPIYQVVQAILKDPEDETEMFVVYANRTEDDILLREELDTWAKKNQRLKVWYVVQESIREGWEYSIGFITEEIVREHLPAAAEDTLALVCGPPAMIQFAVQPNLEKMNYDTKNSMLVF 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13779147 13782726 + PI0028836.1 Cmetu09g0993 365866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g0993 915 Pfam Oxidoreductase molybdopterin binding domain 146 325 IPR000572 -
Cmetu09g0993 915 FunFam Nitrate reductase 98 347 - -
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 213 228 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 465 478 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 288 301 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 187 198 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 271 287 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 355 367 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 386 400 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 134 150 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 400 412 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 112 126 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 304 317 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 198 210 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 452 464 IPR008335 GO:0016491
Cmetu09g0993 915 PRINTS Eukaryotic molybdopterin domain signature 427 437 IPR008335 GO:0016491
Cmetu09g0993 915 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 94 355 IPR036374 -
Cmetu09g0993 915 PRINTS Cytochrome B5 signature 601 613 IPR001199 -
Cmetu09g0993 915 PRINTS Cytochrome B5 signature 574 588 IPR001199 -
Cmetu09g0993 915 PRINTS Cytochrome B5 signature 589 596 IPR001199 -
Cmetu09g0993 915 PRINTS Cytochrome B5 signature 564 574 IPR001199 -
Cmetu09g0993 915 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 539 616 IPR036400 -
Cmetu09g0993 915 Gene3D - 357 532 - -
Cmetu09g0993 915 Gene3D - 766 915 IPR039261 -
Cmetu09g0993 915 SUPERFAMILY Riboflavin synthase domain-like 651 771 IPR017938 -
Cmetu09g0993 915 SMART Cyt_b5_2 542 614 IPR001199 -
Cmetu09g0993 915 Pfam Oxidoreductase NAD-binding domain 790 897 IPR001433 GO:0016491
Cmetu09g0993 915 MobiDBLite consensus disorder prediction 56 75 - -
Cmetu09g0993 915 FunFam Nitrate reductase 535 616 - -
Cmetu09g0993 915 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 658 771 IPR017927 GO:0016491
Cmetu09g0993 915 FunFam Nitrate reductase 357 533 - -
Cmetu09g0993 915 MobiDBLite consensus disorder prediction 1 47 - -
Cmetu09g0993 915 Pfam Oxidoreductase FAD-binding domain 663 770 IPR008333 -
Cmetu09g0993 915 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 758 910 IPR039261 -
Cmetu09g0993 915 PIRSF Nitr_rd_NADH 32 914 IPR012137 GO:0006809|GO:0042128|GO:0050464
Cmetu09g0993 915 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 539 614 IPR001199 -
Cmetu09g0993 915 Gene3D Translation factors 650 765 - -
Cmetu09g0993 915 Gene3D - 96 347 IPR036374 -
Cmetu09g0993 915 CDD eukary_NR_Moco 97 482 - -
Cmetu09g0993 915 Coils Coil 67 87 - -
Cmetu09g0993 915 CDD cyt_b5_reduct_like 663 915 - -
Cmetu09g0993 915 FunFam Nitrate reductase [NADH] 766 915 - -
Cmetu09g0993 915 Pfam Mo-co oxidoreductase dimerisation domain 353 484 IPR005066 GO:0016491|GO:0030151
Cmetu09g0993 915 SUPERFAMILY E set domains 357 484 IPR014756 -
Cmetu09g0993 915 Pfam Cytochrome b5-like Heme/Steroid binding domain 543 613 IPR001199 -
Cmetu09g0993 915 FunFam NADH-cytochrome b5 reductase 649 765 - -
Cmetu09g0993 915 MobiDBLite consensus disorder prediction 1 16 - -
Cmetu09g0993 915 Gene3D - 536 616 IPR036400 -
Cmetu09g0993 915 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 163 198 IPR022407 GO:0043546
Cmetu09g0993 915 PRINTS Cytochrome B5 reductase signature 690 701 - -
Cmetu09g0993 915 PRINTS Cytochrome B5 reductase signature 789 808 - -
Cmetu09g0993 915 PRINTS Cytochrome B5 reductase signature 756 770 - -
Cmetu09g0993 915 PRINTS Cytochrome B5 reductase signature 711 718 - -
Cmetu09g0993 915 PRINTS Cytochrome B5 reductase signature 883 891 - -
Cmetu09g0993 915 PRINTS Cytochrome B5 reductase signature 827 838 - -
Cmetu09g0993 915 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 859 875 IPR001709 GO:0016491
Cmetu09g0993 915 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 789 808 IPR001709 GO:0016491
Cmetu09g0993 915 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 827 838 IPR001709 GO:0016491
Cmetu09g0993 915 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 711 718 IPR001709 GO:0016491
Cmetu09g0993 915 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 883 891 IPR001709 GO:0016491
Cmetu09g0993 915 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 573 583 IPR001709 GO:0016491
Cmetu09g0993 915 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 815 824 IPR001709 GO:0016491
Cmetu09g0993 915 PANTHER SULFITE REDUCTASE 61 487 - -
Cmetu09g0993 915 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 570 577 IPR018506 GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g0993 K10534 - - csv:101219000 1841.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g0889 Cmetu-Chr8:7220773 Cmetu09g0993 Cmetu-Chr9:13779147 2.10E-42 dispersed
Cmetu09g0993 Cmetu-Chr9:13779147 Cmetu12g0166 Cmetu-Chr12:21140159 5.20E-50 dispersed
Cmetu09g0993 Cmetu-Chr9:13779147 Cmetu09g0303 Cmetu-Chr9:13804513 0.00E+00 tandem
Cmetu05g0849 Cmetu-Chr5:1167193 Cmetu09g0993 Cmetu-Chr9:13779147 1.40E-37 transposed
Cmetu07g0308 Cmetu-Chr7:19365419 Cmetu09g0993 Cmetu-Chr9:13779147 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90