Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1035 ATGGCTTCTTCAAGCTACACAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCTGATTGCATATTTGCACCCTATTTTCCCCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTTCAGCCCCACCAGCGCGAGGACGCCGTAAATTCTCTAGCTTATGAGGCCGAGGCTCGTATGAAAGACCCTGTCTACGGTTGCGTTGGGGCCATCTCAGTTTTGCAACGACAAGTTATTCGTCTCCAAAAAGAGCTCGATGCTACAAATGCTGATTTGGTACGATATGCGAGCGGGAGCGCCCGCCCACCCTCGCAATTTGGAAGGAGAGCAACAACTGCCTCGGTGAGTACTCGCCATCATTCTGGTCTGTCTTTTCTTTCTCCCTTGAGTAGTAATGATCATGATGATCCTTATTGCCATGATAAAGAGGAAGGCAATTGA 495 47.47 MASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGSARPPSQFGRRATTASVSTRHHSGLSFLSPLSSNDHDDPYCHDKEEGN 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18831476 18834489 + PI0000516.1 Cmetu09g1035 365908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1035 164 MobiDBLite consensus disorder prediction 122 149 - -
Cmetu09g1035 164 Coils Coil 89 109 - -
Cmetu09g1035 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 128 - -
Cmetu09g1035 164 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cmetu09g1035 164 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cmetu09g1035 164 MobiDBLite consensus disorder prediction 116 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1035 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu09g1035 Cmetu-Chr9:18831476 Cmetu11g2276 Cmetu-Chr11:29737926 1.50E-40 dispersed
Cmetu03g1770 Cmetu-Chr3:580019 Cmetu09g1035 Cmetu-Chr9:18831476 4.70E-17 transposed
Cmetu12g0285 Cmetu-Chr12:2598670 Cmetu09g1035 Cmetu-Chr9:18831476 8.30E-47 wgd
Cmetu02g1623 Cmetu-Chr2:24558890 Cmetu09g1035 Cmetu-Chr9:18831476 1.90E-52 wgd
Cmetu04g0467 Cmetu-Chr4:9660224 Cmetu09g1035 Cmetu-Chr9:18831476 6.50E-59 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1558 . 16 233 AS2 family AT1G65620 66.8 1.4e-69 259.6
Cmetu11g2276 . 2 110 AS2 family AT1G65620 81.7 6.9e-48 187.6
Cmetu02g1623 . 3 177 AS2 family AT1G65620 53.3 2.9e-46 182.2
Cmetu04g0467 . 21 131 AS2 family AT1G65620 70.3 2.3e-43 172.6
Cmetu09g1035 . 1 115 AS2 family AT1G65620 70.4 6.7e-43 171.0
Cmetu12g0285 . 1 116 AS2 family AT1G65620 69.0 5.3e-40 161.4
Cmetu11g2276 . 1 122 AS2 family AT5G66870 86.9 2.0e-57 219.9
Cmetu05g1558 . 19 153 AS2 family AT5G66870 68.4 1.9e-44 176.8
Cmetu02g1623 . 1 113 AS2 family AT5G66870 68.1 2.4e-39 159.8
Cmetu04g0467 . 25 131 AS2 family AT5G66870 68.2 3.2e-39 159.5
Cmetu09g1035 . 1 121 AS2 family AT5G66870 62.8 4.2e-39 159.1
Cmetu12g0285 . 12 138 AS2 family AT5G66870 62.2 1.2e-38 157.5
Cmetu11g2276 . 4 118 AS2 family AT2G23660 69.6 4.3e-44 175.6
Cmetu05g1558 . 21 127 AS2 family AT2G23660 69.2 8.3e-40 161.4
Cmetu02g1623 . 8 113 AS2 family AT2G23660 64.2 2.0e-38 156.8
Cmetu04g0467 . 25 141 AS2 family AT2G23660 58.1 2.3e-37 153.3
Cmetu12g0285 . 12 116 AS2 family AT2G23660 65.7 1.9e-36 150.2
Cmetu09g1035 . 4 114 AS2 family AT3G27650 87.4 3.0e-54 208.4
Cmetu04g0467 . 22 132 AS2 family AT3G27650 84.7 2.2e-52 202.2
Cmetu02g1623 . 4 114 AS2 family AT3G27650 78.4 2.1e-47 185.7
Cmetu12g0285 . 7 117 AS2 family AT3G27650 73.9 4.9e-44 174.5
Cmetu05g1558 . 18 127 AS2 family AT3G27650 68.2 7.8e-42 167.2
Cmetu11g2276 . 4 112 AS2 family AT3G27650 67.9 4.3e-40 161.4
Cmetu02g1623 . 3 166 AS2 family AT5G63090 68.2 3.4e-57 218.4
Cmetu04g0467 . 20 143 AS2 family AT5G63090 78.2 5.7e-52 201.1
Cmetu09g1035 . 1 113 AS2 family AT5G63090 85.1 2.4e-50 195.7
Cmetu12g0285 . 7 116 AS2 family AT5G63090 82.7 6.9e-50 194.1
Cmetu05g1558 . 18 127 AS2 family AT5G63090 74.5 2.3e-45 179.1
Cmetu11g2276 . 2 110 AS2 family AT5G63090 70.6 1.7e-40 162.9
Cmetu12g1460 . 14 153 AS2 family AT5G63090 56.4 7.2e-39 157.5
Cmetu11g1961 . 14 117 AS2 family AT5G63090 67.3 1.4e-37 153.3
Cmetu11g2099 . 2 137 AS2 family AT2G30130 69.1 6.1e-49 191.0
Cmetu12g1460 . 10 129 AS2 family AT2G30130 69.2 2.4e-45 179.1
Cmetu11g1961 . 10 125 AS2 family AT2G30130 72.4 7.0e-45 177.6
Cmetu01g1532 . 16 127 AS2 family AT2G30130 70.5 1.9e-42 169.5
Cmetu02g1623 . 8 111 AS2 family AT2G30130 68.3 1.4e-37 153.3
Cmetu10g0272 . 39 150 AS2 family AT2G30130 66.1 2.4e-37 152.5
Cmetu05g1558 . 22 124 AS2 family AT2G30130 67.0 9.1e-37 150.6
Cmetu04g0467 . 26 129 AS2 family AT2G30130 65.4 1.2e-36 150.2
Cmetu12g1460 . 4 170 AS2 family AT1G31320 74.6 1.9e-65 245.7
Cmetu11g1961 . 1 171 AS2 family AT1G31320 72.0 1.4e-60 229.6
Cmetu01g1532 . 18 131 AS2 family AT1G31320 76.3 6.6e-47 184.1
Cmetu11g2099 . 6 113 AS2 family AT1G31320 68.5 3.5e-40 161.8
Cmetu10g0272 . 48 160 AS2 family AT1G31320 62.8 2.1e-37 152.5
Cmetu02g1623 . 9 120 AS2 family AT1G31320 62.5 8.1e-37 150.6
Cmetu12g0199 . 34 205 AS2 family AT2G28500 54.6 7.6e-46 181.0
Cmetu11g0670 . 33 198 AS2 family AT2G28500 53.2 4.6e-43 171.8
Cmetu12g0582 . 20 134 AS2 family AT2G28500 68.7 1.3e-42 170.2
Cmetu10g0142 . 47 139 AS2 family AT2G28500 88.2 1.7e-42 169.9
Cmetu11g1961 . 13 120 AS2 family AT2G28500 67.6 8.4e-37 151.0
Cmetu11g0670 . 33 198 AS2 family AT1G07900 63.9 4.0e-45 178.3
Cmetu10g0142 . 47 202 AS2 family AT1G07900 68.9 2.0e-44 176.0
Cmetu12g0199 . 29 152 AS2 family AT1G07900 69.4 8.4e-43 170.6
Cmetu12g0582 . 20 134 AS2 family AT1G07900 65.2 3.3e-39 158.7
Cmetu11g1961 . 6 171 AS2 family AT1G16530 57.1 9.8e-48 186.8
Cmetu12g1460 . 4 119 AS2 family AT1G16530 67.5 6.2e-42 167.5
Cmetu01g1532 . 20 126 AS2 family AT1G16530 68.5 1.1e-38 156.8
Cmetu11g2099 . 6 148 AS2 family AT1G16530 54.2 6.0e-37 151.0
Cmetu10g0272 . 1 157 AS2 family AT2G30340 70.2 2.0e-58 223.0
Cmetu03g1506 . 60 170 AS2 family AT2G30340 79.3 7.7e-50 194.5
Cmetu10g0272 . 32 157 AS2 family AT2G40470 87.3 3.0e-59 225.3
Cmetu03g1506 . 60 169 AS2 family AT2G40470 86.4 7.9e-52 200.7
Cmetu11g1961 . 11 121 AS2 family AT2G40470 65.8 4.1e-40 161.8
Cmetu01g1532 . 22 126 AS2 family AT2G40470 66.7 3.2e-37 152.1
Cmetu12g1460 . 15 125 AS2 family AT2G40470 62.2 3.2e-37 152.1
Cmetu03g0340 . 1 119 AS2 family AT3G11090 78.2 8.3e-47 183.7
Cmetu04g2214 . 1 95 AS2 family AT2G42440 84.2 6.3e-43 171.4
Cmetu01g0205 . 7 143 AS2 family AT2G42440 62.0 3.1e-42 169.1
Cmetu11g1613 . 29 138 AS2 family AT2G42440 65.2 3.0e-37 152.5
Cmetu01g0205 . 4 126 AS2 family AT3G58190 76.0 5.3e-49 191.4
Cmetu04g2214 . 4 95 AS2 family AT3G58190 90.2 4.6e-45 178.3
Cmetu11g1613 . 29 127 AS2 family AT3G58190 74.7 5.8e-40 161.4
Cmetu04g1957 . 30 148 AS2 family AT3G58190 61.3 1.6e-37 153.3
Cmetu04g2214 . 1 172 AS2 family AT2G31310 54.3 5.6e-39 157.9
Cmetu11g1613 . 16 131 AS2 family AT2G42430 69.0 7.7e-41 164.5
Cmetu04g1957 . 29 169 AS2 family AT2G42430 56.7 7.2e-39 157.9
Cmetu04g2214 . 3 94 AS2 family AT2G42430 80.4 9.5e-39 157.5
Cmetu06g2544 . 16 126 AS2 family AT2G42430 64.9 8.0e-38 154.5
Cmetu01g0205 . 5 114 AS2 family AT2G42430 65.5 3.0e-37 152.5
Cmetu11g1613 . 29 221 AS2 family AT4G00220 64.1 7.7e-59 224.2
Cmetu06g2544 . 24 190 AS2 family AT4G00220 53.6 1.0e-42 170.6
Cmetu11g0828 . 17 213 AS2 family AT4G00220 54.4 2.3e-39 159.5
Cmetu11g1613 . 29 240 AS2 family AT2G45420 69.0 9.1e-72 267.3
Cmetu06g2544 . 24 197 AS2 family AT2G45420 53.8 1.7e-49 193.4
Cmetu04g1957 . 30 136 AS2 family AT2G45420 74.8 7.5e-42 167.9
Cmetu01g0205 . 12 118 AS2 family AT2G45420 70.1 2.4e-40 162.9
Cmetu04g2214 . 7 95 AS2 family AT2G45420 76.4 1.6e-36 150.2
Cmetu04g1957 . 30 143 AS2 family AT3G03760 86.0 2.0e-50 196.4
Cmetu11g1613 . 29 130 AS2 family AT3G03760 80.4 2.5e-40 162.9
Cmetu11g1613 . 29 139 AS2 family AT4G00210 73.0 1.5e-43 173.3
Cmetu06g2544 . 16 133 AS2 family AT4G00210 63.9 4.1e-41 165.2
Cmetu01g0205 . 5 116 AS2 family AT4G00210 62.5 1.2e-37 153.7
Cmetu11g1613 . 29 224 AS2 family AT2G45410 51.0 1.6e-46 183.0
Cmetu04g1957 . 30 131 AS2 family AT2G45410 67.6 1.2e-36 150.2
Cmetu10g0887 . 7 117 AS2 family AT5G06080 73.0 2.1e-43 172.6
Cmetu01g0277 . 29 137 AS2 family AT3G13850 76.1 1.8e-43 173.3
Cmetu06g0556 . 1 162 AS2 family AT1G68510 65.9 4.6e-59 224.9
Cmetu02g2079 . 1 167 AS2 family AT1G68510 60.9 2.0e-54 209.5
Cmetu10g0994 . 1 136 AS2 family AT1G68510 65.5 4.3e-49 191.8
Cmetu08g0194 . 1 104 AS2 family AT1G68510 63.5 1.8e-39 159.8
Cmetu07g1035 . 1 104 AS2 family AT1G68510 64.4 1.1e-36 150.6
Cmetu06g0556 . 1 298 AS2 family AT1G67100 50.2 8.9e-71 263.8
Cmetu02g2079 . 1 134 AS2 family AT1G67100 75.7 1.9e-60 229.6
Cmetu10g0994 . 1 132 AS2 family AT1G67100 67.1 6.0e-51 198.0
Cmetu08g0194 . 1 110 AS2 family AT1G67100 66.4 4.2e-44 175.3
Cmetu07g1035 . 1 110 AS2 family AT1G67100 61.8 1.5e-38 156.8
Cmetu06g0556 . 1 298 AS2 family AT3G02550 56.7 2.4e-80 295.8
Cmetu02g2079 . 1 167 AS2 family AT3G02550 67.6 3.5e-63 238.8
Cmetu10g0994 . 1 141 AS2 family AT3G02550 64.1 7.0e-48 188.0
Cmetu08g0194 . 1 136 AS2 family AT3G02550 54.4 1.6e-39 160.2
Cmetu08g0194 . 1 233 AS2 family AT5G67420 58.1 2.8e-70 262.3
Cmetu07g1035 . 1 127 AS2 family AT5G67420 64.4 7.4e-47 184.5
Cmetu06g0556 . 3 112 AS2 family AT5G67420 68.2 1.2e-44 177.2
Cmetu02g2079 . 3 112 AS2 family AT5G67420 61.8 2.3e-40 162.9
Cmetu10g0994 . 3 106 AS2 family AT5G67420 63.5 1.3e-38 157.1
Cmetu08g0194 . 1 232 AS2 family AT3G49940 60.6 5.0e-72 268.1
Cmetu06g0556 . 3 157 AS2 family AT3G49940 52.9 5.2e-45 178.3
Cmetu02g2079 . 3 112 AS2 family AT3G49940 62.7 1.7e-40 163.3
Cmetu10g0994 . 3 106 AS2 family AT3G49940 64.4 1.4e-37 153.7
Cmetu08g0194 . 1 233 AS2 family AT4G37540 57.1 7.3e-68 254.2
Cmetu06g0556 . 3 113 AS2 family AT4G37540 65.8 9.0e-42 167.5
Cmetu02g2079 . 3 113 AS2 family AT4G37540 63.1 4.9e-40 161.8
Cmetu10g0994 . 3 126 AS2 family AT4G37540 55.6 5.1e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002726 1 3 0 2 1 2 3 2 2 1 2 2 2 2 2 3 2 1 2 2 2 2 2 2 2 1 2 4 2 1 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8520 PF03195 LOB 9.50E-42 No_clan Cmetu TF