Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1097 ATGAACGGCGTACTCCAAAATTCCGAGATCCAACCCACCGCAGCCGCCAAACCAAGAACCCAAATCTCCAAATGGGTTACACAAACCGTCGACGGATCCACCGTCCACGGCGTCGAAAACGAGCTTCTAGTTCTACAGAAAATGCTCGAGAAACCACCTAACAGCGGCGGCGGGAACGGATTCAGAGCAATCGGAATCATTGGAGTACGAGGGATCGGAAAATCAACAATTTCCCGAGCCTTTCTCCAAAACCCAGAAGTAAAATCCAAGTTCCTCCCCAGAATTTGGATCTCGATGTCGAGAAATTTCACAGAACACGACGATCCCAAAATCGCTCTTCTGAAGAGAATTCTAATCTCTCTCGGAGTTGACACGAATTTTCCAGGCGACGCAACACTCGGAAGCCTCCTCTACGCTCTCCGACTTCAACTGAGAGGCAAACGGTATCTGATTGTGCTGGATGATGTTCAAGAATTTAAAACAGAGGAAGAACAGAATGATTGGTACTGGGATTTGAATTCTTGTGAGAAAATTGGGGAGAAATTAAGAGATGGATTTCCGAAAGGGAATGGAGGGGCTGTGATTCTGACGAGTAGAAGTGAGAAAGCTGCAAAAGCTATGGTGGGAGAGGGAAATTTGAGGTGTTTGGTTCCTCAGAAAGACCCAGAAAGTTTCTGGGAAATTTTCCGGCAAGAAGTTGTGAAAGATGGAATTTCGATCCCCGATGAAATTCTGAATTTCAAGGAATTGAAAGTGAAATTGTTGAAGAAATGTGGTGGACTTCCGCTGATCGCTAAGATGATGGGAGAGATTCAATTCAAAAAAGAACTAGAAAAGAAGCGACGAGAAGAAGAAGAAGAAGACCGATGA 870 45.06 MNGVLQNSEIQPTAAAKPRTQISKWVTQTVDGSTVHGVENELLVLQKMLEKPPNSGGGNGFRAIGIIGVRGIGKSTISRAFLQNPEVKSKFLPRIWISMSRNFTEHDDPKIALLKRILISLGVDTNFPGDATLGSLLYALRLQLRGKRYLIVLDDVQEFKTEEEQNDWYWDLNSCEKIGEKLRDGFPKGNGGAVILTSRSEKAAKAMVGEGNLRCLVPQKDPESFWEIFRQEVVKDGISIPDEILNFKELKVKLLKKCGGLPLIAKMMGEIQFKKELEKKRREEEEEDR 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3370741 3372065 - PI0021171.1 Cmetu09g1097 365970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1097 289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 277 IPR027417 -
Cmetu09g1097 289 Pfam NB-ARC domain 62 281 IPR002182 GO:0043531
Cmetu09g1097 289 PANTHER DISEASE RESISTANCE PROTEIN RP 35 274 IPR044974 GO:0006952
Cmetu09g1097 289 Gene3D - 21 212 IPR027417 -
Cmetu09g1097 289 PRINTS Disease resistance protein signature 258 272 - -
Cmetu09g1097 289 PRINTS Disease resistance protein signature 143 157 - -
Cmetu09g1097 289 PRINTS Disease resistance protein signature 63 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1097 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu09g1097 Cmetu-Chr9:3370741 Cmetu01g2460 Cmetu-Chr1:26075197 5.70E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1255 . . . . . . Bma04g00863 . . . . . . . Sed02g1078 . . Bhi01g01169 Tan10g1170 Cmetu09g1097 . Hepe05g1313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012192 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 0 1 1 1 1 1 1 1 2 1 1 0 28