Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1218 ATGGGCGAGGCCGTGGTCATCAGCTCTGAGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACAACGACGATATGGCAGATGCAGAGAGTATGGGCACTCACAGACCTAACAGAGACGGCAGTTCAAGTGGATTTGGGATCGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTTGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTCCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAAATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCAGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTCCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATCAGCACTGTTTACAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAACCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGTGAGAGCTGACGTTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAATCACTCAACTGGTTATATTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGAAGTGATACTCAGAGCTCTTGTACAAAGGTAGATTTCGAAGCTGGAAATAAGATACAGGAAAATTCACAGCCTAGGCAGGGAAAAGCCTCTCCCAACGACTTCAAGCCACAAAAAGATGAACGTCACATCAATTTGAGTCAAAGATTGTTTATGCATGAAAATGAAACTGGAGGATTGGCAATGAGTTGCTATGTGAATACTGATTTACCAATCACACTAAGCATGGGTCTCGAGCCAATCAATGATGGGAGAAGTCCTAATATTGCTAGTGAAGCAGGTGATGATAAGGATCTGCCTGCCAACCCATCCAGAGATGCAACTGCCTCGAATCATGCCTGTATCAAGTATCCCGATAACTACCAAAAATATTCTCCTTCCAACAATTTTGCCGCAAACAATTTCAGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAACGATTTTGAGGAGCGTGCTGCAGGACAGGCTACCCTCAAACATTCTAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCGTTGCAATCACTTCAAGCAAAATCAAGCAGCATCTATGATGAGCAAAAGGAAATCGGAAACAACCCTGGGCATATTGGAAGTATCGGTGCTACTTCTACCTCTGATACCATTAATCCCACGCCAAATCTTCAAAAGAGTAATACTTCTATGCCTATGATCACGAGTCAATCTACTCAGTCTGAAGTTGCTAAATCAAGTACTTCAGAGACGGTAAACCCTCTTCAAGTTTCAGGGACAGATTTGATGTCTAATAATCAACGCTCAGGCTCAGGCCATGGCTCTTTACCTTCTCACAACTTCTGCGCACAACAGGGTAGCCCATCATCTCCATGTCGAACTTCAGTCACCCATACAGAACTCATCTTTGGAAAACAGACGGTTTATCCTTTAAACCTTGAGAATCATAATTTGGAGCAATTTCTTAACCAGCACCGCAGCGTAAGCAGTCCAGCAAGCAGAAAGATAGAAAATTCTGGCCAGTCTGTGGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAATGTATGTCGTGGTAATACAACTCATGTTGGAAGCCTGGGATATCCTAGCACCTGTGGAAGCAACAGCAACGTAGATCGAGTTGGCATTGCAAGGGTTACATCTGAGAGTAGAAATGAAGAAGCTTCGTTTTCTCAAGGAGATTCTTATCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGGAAAGATAGATGTTATGAGAAAAAGGTCCGTTATGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCGAGGGTGAAGGGACAGTTTGTCCGGAGAGTATTGACTGATCCATTGCCTGCAGAAACCAATGACAATACATCCAACGGTTAG 2088 43.97 MGEAVVISSEDVDVDVDYVRLHNDDMADAESMGTHRPNRDGSSSGFGIGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRADVQEKVEVTSENETASNHSTGYIAGVQRNNKNIEKGSDTQSSCTKVDFEAGNKIQENSQPRQGKASPNDFKPQKDERHINLSQRLFMHENETGGLAMSCYVNTDLPITLSMGLEPINDGRSPNIASEAGDDKDLPANPSRDATASNHACIKYPDNYQKYSPSNNFAANNFSSALHLDLSLRRCQPNDFEERAAGQATLKHSSASAFTRYTFRPLQSLQAKSSSIYDEQKEIGNNPGHIGSIGATSTSDTINPTPNLQKSNTSMPMITSQSTQSEVAKSSTSETVNPLQVSGTDLMSNNQRSGSGHGSLPSHNFCAQQGSPSSPCRTSVTHTELIFGKQTVYPLNLENHNLEQFLNQHRSVSSPASRKIENSGQSVENQGHISPTTDHSANSNVCRGNTTHVGSLGYPSTCGSNSNVDRVGIARVTSESRNEEASFSQGDSYRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVLTDPLPAETNDNTSNG 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 61152 66427 + PI0005852.1 Cmetu09g1218 366091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1218 695 Gene3D - 59 245 - -
Cmetu09g1218 695 MobiDBLite consensus disorder prediction 616 635 - -
Cmetu09g1218 695 Pfam CCT motif 636 678 IPR010402 GO:0005515
Cmetu09g1218 695 MobiDBLite consensus disorder prediction 308 332 - -
Cmetu09g1218 695 MobiDBLite consensus disorder prediction 197 265 - -
Cmetu09g1218 695 MobiDBLite consensus disorder prediction 485 515 - -
Cmetu09g1218 695 SUPERFAMILY CheY-like 55 185 IPR011006 -
Cmetu09g1218 695 CDD psREC_PRR 63 166 - -
Cmetu09g1218 695 MobiDBLite consensus disorder prediction 197 256 - -
Cmetu09g1218 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 61 329 IPR045279 GO:0009736
Cmetu09g1218 695 ProSiteProfiles Response regulatory domain profile. 62 180 IPR001789 GO:0000160
Cmetu09g1218 695 MobiDBLite consensus disorder prediction 547 581 - -
Cmetu09g1218 695 Pfam Response regulator receiver domain 63 174 IPR001789 GO:0000160
Cmetu09g1218 695 ProSiteProfiles CCT domain profile. 636 678 IPR010402 GO:0005515
Cmetu09g1218 695 SMART REC_2 61 176 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1218 K12130 - - csv:101209788 1288.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g0676 Cmetu-Chr8:16470263 Cmetu09g1218 Cmetu-Chr9:61152 7.50E-45 dispersed
Cmetu09g0445 Cmetu-Chr9:4790513 Cmetu09g1218 Cmetu-Chr9:61152 5.40E-08 dispersed
Cmetu09g1218 Cmetu-Chr9:61152 Cmetu12g2014 Cmetu-Chr12:556771 8.10E-11 dispersed
Cmetu09g1218 Cmetu-Chr9:61152 Cmetu02g1717 Cmetu-Chr2:20518373 3.60E-19 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g1880 . 52 346 Response Regulator Gene Family AT3G16857 53.6 1.1e-59 228.4
Cmetu03g0215 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cmetu02g1717 . 18 383 Response Regulator Gene Family AT4G31920 54.0 1.8e-90 330.5
Cmetu07g1880 . 1 413 Response Regulator Gene Family AT4G31920 52.2 3.8e-88 322.8
Cmetu05g0860 . 13 340 Response Regulator Gene Family AT4G31920 51.5 7.2e-79 292.0
Cmetu06g0551 . 16 270 Response Regulator Gene Family AT4G31920 53.1 1.2e-68 258.1
Cmetu11g1360 . 31 268 Response Regulator Gene Family AT4G31920 51.6 1.2e-62 238.0
Cmetu03g0215 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.7e-62 236.1
Cmetu06g0551 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.9e-39 159.1
Cmetu02g1717 . 99 269 Response Regulator Gene Family AT1G67710 50.3 1.2e-36 151.4
Cmetu05g0860 . 17 362 Response Regulator Gene Family AT2G25180 54.5 1.2e-82 304.7
Cmetu06g0551 . 18 290 Response Regulator Gene Family AT2G25180 54.7 3.3e-77 286.6
Cmetu03g0215 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.6e-69 258.5
Cmetu11g1360 . 76 309 Response Regulator Gene Family AT2G01760 51.0 2.3e-53 206.5
Cmetu02g1717 . 79 303 Response Regulator Gene Family AT2G01760 52.6 6.9e-50 194.9
Cmetu03g0215 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.8e-48 189.1
Cmetu03g0215 . 9 258 Response Regulator Gene Family AT5G58080 50.6 7.1e-62 235.7
Cmetu06g0551 . 12 241 Response Regulator Gene Family AT4G16110 65.3 3.3e-78 290.0
Cmetu11g1360 . 30 239 Response Regulator Gene Family AT4G16110 60.3 1.2e-67 255.0
Cmetu07g1880 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.7e-61 233.4
Cmetu03g0215 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cmetu02g1717 . 17 249 Response Regulator Gene Family AT4G16110 53.0 5.5e-57 219.5
Cmetu05g0860 . 12 266 Response Regulator Gene Family AT4G16110 52.0 1.5e-51 201.4
Cmetu02g1807 . 18 186 Response Regulator Gene Family AT3G48100 66.3 5.6e-52 201.1
Cmetu10g0771 . 29 162 Response Regulator Gene Family AT3G48100 72.4 6.2e-51 197.6
Cmetu09g0403 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.7e-40 162.9
Cmetu08g0497 . 17 156 Response Regulator Gene Family AT3G48100 58.6 1.4e-39 159.8
Cmetu04g1441 . 3 155 Response Regulator Gene Family AT3G48100 52.9 2.4e-39 159.1
Cmetu10g0872 . 12 169 Response Regulator Gene Family AT3G48100 55.1 3.2e-39 158.7
Cmetu10g0771 . 1 175 Response Regulator Gene Family AT1G59940 65.4 3.9e-56 215.7
Cmetu02g1807 . 9 158 Response Regulator Gene Family AT1G59940 62.3 2.1e-46 183.3
Cmetu10g0872 . 7 157 Response Regulator Gene Family AT1G59940 58.3 1.3e-40 164.1
Cmetu09g0403 . 5 150 Response Regulator Gene Family AT1G59940 61.0 1.3e-40 164.1
Cmetu04g1441 . 8 153 Response Regulator Gene Family AT1G59940 57.5 3.0e-40 162.9
Cmetu08g0497 . 17 154 Response Regulator Gene Family AT1G59940 58.7 5.6e-39 158.7
Cmetu10g0771 . 16 185 Response Regulator Gene Family AT1G10470 67.1 4.2e-55 211.8
Cmetu02g1807 . 29 191 Response Regulator Gene Family AT1G10470 60.8 1.8e-45 179.9
Cmetu04g1441 . 10 153 Response Regulator Gene Family AT1G10470 58.3 5.0e-40 161.8
Cmetu09g0403 . 5 155 Response Regulator Gene Family AT1G10470 57.7 8.6e-40 161.0
Cmetu10g0872 . 7 157 Response Regulator Gene Family AT1G10470 56.3 1.2e-38 157.1
Cmetu08g0497 . 17 154 Response Regulator Gene Family AT1G10470 60.1 1.6e-38 156.8
Cmetu02g1807 . 18 186 Response Regulator Gene Family AT3G48100 66.3 5.6e-52 201.1
Cmetu10g0771 . 29 162 Response Regulator Gene Family AT3G48100 72.4 6.2e-51 197.6
Cmetu09g0403 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.7e-40 162.9
Cmetu08g0497 . 17 156 Response Regulator Gene Family AT3G48100 58.6 1.4e-39 159.8
Cmetu04g1441 . 3 155 Response Regulator Gene Family AT3G48100 52.9 2.4e-39 159.1
Cmetu10g0872 . 12 169 Response Regulator Gene Family AT3G48100 55.1 3.2e-39 158.7
Cmetu02g1807 . 30 163 Response Regulator Gene Family AT5G62920 78.4 4.3e-52 201.4
Cmetu10g0771 . 11 175 Response Regulator Gene Family AT5G62920 64.2 1.2e-49 193.4
Cmetu09g0403 . 9 149 Response Regulator Gene Family AT5G62920 59.6 4.5e-41 164.9
Cmetu04g1441 . 10 155 Response Regulator Gene Family AT5G62920 55.5 1.9e-39 159.5
Cmetu10g0872 . 2 172 Response Regulator Gene Family AT5G62920 51.2 2.7e-38 155.6
Cmetu02g1807 . 29 162 Response Regulator Gene Family AT1G19050 75.4 2.2e-49 192.6
Cmetu10g0771 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.3e-44 176.8
Cmetu04g1441 . 8 158 Response Regulator Gene Family AT1G19050 53.6 1.4e-38 156.8
Cmetu10g0872 . 9 154 Response Regulator Gene Family AT1G19050 55.5 5.2e-38 154.8
Cmetu08g0497 . 15 156 Response Regulator Gene Family AT1G19050 55.6 5.2e-38 154.8
Cmetu09g0403 . 3 152 Response Regulator Gene Family AT1G19050 52.7 3.3e-37 152.1
Cmetu08g0497 . 8 260 Response Regulator Gene Family AT2G41310 53.7 9.9e-59 223.8
Cmetu04g1441 . 1 159 Response Regulator Gene Family AT2G41310 72.3 4.2e-57 218.4
Cmetu09g0403 . 1 151 Response Regulator Gene Family AT2G41310 65.6 5.4e-49 191.4
Cmetu10g0872 . 3 150 Response Regulator Gene Family AT2G41310 67.6 7.8e-48 187.6
Cmetu10g0771 . 25 158 Response Regulator Gene Family AT2G41310 58.9 3.2e-41 165.6
Cmetu02g1807 . 28 159 Response Regulator Gene Family AT2G41310 61.9 3.5e-40 162.2
Cmetu08g0497 . 8 260 Response Regulator Gene Family AT3G57040 53.9 8.1e-64 240.7
Cmetu04g1441 . 1 157 Response Regulator Gene Family AT3G57040 75.8 5.1e-58 221.5
Cmetu09g0403 . 1 154 Response Regulator Gene Family AT3G57040 66.2 7.9e-51 197.6
Cmetu10g0872 . 8 150 Response Regulator Gene Family AT3G57040 70.6 2.5e-49 192.6
Cmetu10g0771 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.5e-43 172.2
Cmetu02g1807 . 28 159 Response Regulator Gene Family AT3G57040 62.4 1.3e-40 163.7
Cmetu02g1807 . 24 179 Response Regulator Gene Family AT1G74890 69.4 6.9e-51 197.6
Cmetu10g0771 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.7e-47 185.7
Cmetu10g0872 . 2 160 Response Regulator Gene Family AT1G74890 57.9 4.5e-42 168.3
Cmetu09g0403 . 7 144 Response Regulator Gene Family AT1G74890 58.7 6.1e-39 157.9
Cmetu08g0497 . 15 175 Response Regulator Gene Family AT1G74890 52.7 8.0e-39 157.5
Cmetu04g1441 . 8 153 Response Regulator Gene Family AT1G74890 54.8 1.0e-38 157.1
Cmetu10g0771 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.7e-39 159.5
Cmetu04g1441 . 6 155 Response Regulator Gene Family AT2G40670 55.0 1.7e-39 159.5
Cmetu08g0497 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.8e-37 150.6
Cmetu02g1807 . 29 160 Response Regulator Gene Family AT2G40670 58.5 1.0e-36 150.2
Cmetu10g0771 . 26 159 Response Regulator Gene Family AT3G56380 54.8 3.2e-40 161.8
Cmetu04g1441 . 6 155 Response Regulator Gene Family AT3G56380 55.0 1.6e-39 159.5
Cmetu02g1807 . 24 160 Response Regulator Gene Family AT3G56380 58.7 3.5e-39 158.3
Cmetu09g0403 . 11 152 Response Regulator Gene Family AT3G56380 57.3 5.0e-38 154.5
Cmetu10g0872 . 2 149 Response Regulator Gene Family AT3G56380 53.7 5.6e-37 151.0
Cmetu07g1880 . 52 346 Response Regulator Gene Family AT3G16857 53.6 1.1e-59 228.4
Cmetu03g0215 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cmetu06g0551 . 12 241 Response Regulator Gene Family AT4G16110 65.3 3.3e-78 290.0
Cmetu11g1360 . 30 239 Response Regulator Gene Family AT4G16110 60.3 1.2e-67 255.0
Cmetu07g1880 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.7e-61 233.4
Cmetu03g0215 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cmetu02g1717 . 17 249 Response Regulator Gene Family AT4G16110 53.0 5.5e-57 219.5
Cmetu05g0860 . 12 266 Response Regulator Gene Family AT4G16110 52.0 1.5e-51 201.4
Cmetu02g1717 . 18 383 Response Regulator Gene Family AT4G31920 54.0 1.8e-90 330.5
Cmetu07g1880 . 1 413 Response Regulator Gene Family AT4G31920 52.2 3.8e-88 322.8
Cmetu05g0860 . 13 340 Response Regulator Gene Family AT4G31920 51.5 7.2e-79 292.0
Cmetu06g0551 . 16 270 Response Regulator Gene Family AT4G31920 53.1 1.2e-68 258.1
Cmetu11g1360 . 31 268 Response Regulator Gene Family AT4G31920 51.6 1.2e-62 238.0
Cmetu03g0215 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.7e-62 236.1
Cmetu06g0551 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.9e-39 159.1
Cmetu02g1717 . 99 269 Response Regulator Gene Family AT1G67710 50.3 1.2e-36 151.4
Cmetu05g0860 . 17 362 Response Regulator Gene Family AT2G25180 54.5 1.2e-82 304.7
Cmetu06g0551 . 18 290 Response Regulator Gene Family AT2G25180 54.7 3.3e-77 286.6
Cmetu03g0215 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.6e-69 258.5
Cmetu11g1360 . 76 309 Response Regulator Gene Family AT2G01760 51.0 2.3e-53 206.5
Cmetu02g1717 . 79 303 Response Regulator Gene Family AT2G01760 52.6 6.9e-50 194.9
Cmetu03g0215 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.8e-48 189.1
Cmetu03g0215 . 9 258 Response Regulator Gene Family AT5G58080 50.6 7.1e-62 235.7
Cmetu12g2014 . 6 555 Response Regulator Gene Family AT5G61380 50.9 1.8e-142 503.4
Cmetu08g0676 . 38 206 Response Regulator Gene Family AT5G60100 68.6 2.4e-55 213.4
Cmetu09g1218 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.3e-45 180.3
Cmetu08g0676 . 67 206 Response Regulator Gene Family AT5G24470 55.7 4.3e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8532 PF00072 Response_reg 7.00E-21 CL0304 Cmetu TR