Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1622 ATGGCTTCAACTCTTTCCTCTTCTCCTTCACCTCTGTTGTCCTTCAAACCCAGACCCCTCAAGAAAATTCCTCCACCACGAGTCACGGTTCTGCCTTTGAGGGTGAGAGCTAAGGCTGGAGCCGGCAGCGACAACAGCAAAGATACATCTTTGGAGGTTCATGTCAATCCAAGTGACCAGGGCCAGGGAACGTCCGTGGAGAGACGGCCGGGGCCCAAGCGGCTAGCCCTGGACATTTCACCTTATGGAATTCTAGACCCTCTGTCTCCGATGAGGACGATGAGACAAATGCTGGATACAGTGGACAGGTTATTCGATGACGCAGTAATGATGACACCAGGATTGAGATGGAACAGGGGTGGGGTCCGAGCTCCTTGGGACATGGAAGAGCACGAAAACGAAATCAGGATGCGTTTTGACATGCCTGGCCTCTCCAAGGAATATGTCAAGGTTTCTGTGGAAGACAACTTTTTGATTATAAAAGGCGGCCATGAGGCTGAGACCTCCAACACCAGCAGCAATGATGACGGCTGGTCCACAAGGAATGCATCTGCCTACCACACCCGCCTCCAACTTCCTGATAGCGTTGACAAAGACAACATCAAGGCTCAGCTTACCGATGGCGTTCTTTACATTACGCTTCCCAAAATCAAAGTCCAACGCAAGGTCATGGATATAGAGATCCAGTAA 690 50.72 MASTLSSSPSPLLSFKPRPLKKIPPPRVTVLPLRVRAKAGAGSDNSKDTSLEVHVNPSDQGQGTSVERRPGPKRLALDISPYGILDPLSPMRTMRQMLDTVDRLFDDAVMMTPGLRWNRGGVRAPWDMEEHENEIRMRFDMPGLSKEYVKVSVEDNFLIIKGGHEAETSNTSSNDDGWSTRNASAYHTRLQLPDSVDKDNIKAQLTDGVLYITLPKIKVQRKVMDIEIQ 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41685 44836 + PI0016341.1 Cmetu09g1622 366495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1622 229 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 117 229 IPR002068 -
Cmetu09g1622 229 Gene3D - 82 229 IPR008978 -
Cmetu09g1622 229 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 10 229 IPR044587 GO:0009408
Cmetu09g1622 229 SUPERFAMILY HSP20-like chaperones 92 227 IPR008978 -
Cmetu09g1622 229 Pfam Hsp20/alpha crystallin family 127 229 IPR002068 -
Cmetu09g1622 229 CDD ACD_sHsps-like 127 216 - -
Cmetu09g1622 229 MobiDBLite consensus disorder prediction 1 73 - -
Cmetu09g1622 229 MobiDBLite consensus disorder prediction 43 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1622 K13993 - - csv:101210285 411.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu09g1622 Cmetu-Chr9:41685 Cmetu10g0577 Cmetu-Chr10:17962998 8.30E-29 dispersed
Cmetu09g1622 Cmetu-Chr9:41685 Cmetu10g1543 Cmetu-Chr10:15242910 1.20E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1127 . . . . . Bpe10g00774 . . Cmo04g01905 . . . . . Sed01g3445 . Cpe01g01592 Bhi07g01860 Tan04g0105 Cmetu09g1622 Lac13g0095 Hepe10g1551 . . Cla05g02629 Cam05g2820 Cec05g2855 Cco05g2888 Clacu05g2823 Cmu05g2671 Cre05g2788 Cone13ag1110 Cone19ag1098 . . Lsi04g00644 . . . Blo06g00817 . . . . . . . . . . Cma04g01808 . Car04g01821 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014143 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 23