Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu09g1642 ATGGCTTCCACTTCTACCTCTACAATCTCTTTTTGCTCTCATCCTAAGATTTTCCTCCGGCTTCATTCGCTAGGGTCCCCACGTGTGGGCTTCGGCGCTTCTGGCTTGAACTATCATGCCAATGGTGTGTTGCTCCCGGTTACGCATAGGACAAGAGGTTTCAGGTTGAGAAACTTGGTGTTGAAGGCTACGTTGAGGTCCGACAGCGGCTCCAGGCGGGCTGCATCTTCTCGAAGAGTTTACAGAGACTCTCAAACTCAGAGCACATCGTTGGTTGCCCCAGTCAAGCAGCTTGCCTCTACTGTTTTACCTGCCGGTGTTTTCGTTGTGGTTACGTTCGTTTTATGGAAATTGGTGGAGCGACTCATGGTTCCGAAGTCAGATAAGTCGTCTTCATCCGTGAAAAACAAATGGTCATTTGGTGCTGGTATAAATTTGTTTCCAGATCTTGCTGCTAAGGTTGACAGAGAAGCCAAATTGAAGCTTAATGACTTTGCAAAAGAGCTCCGGACTTTTAGAAGTGTTGACATGACAGCACGCAACTTTGGAGATGAAGGACTGTTTTTTCTGGCTGAGAGTTTAGGATACAATCAGACAGTTGAGGAAGTGAATTTTTCTGCAAATGGAATAACAGCTGAAGGGATAAAAGCGTTTGATGGTGTCCTTCAATCAAATATTATTTTAAAGACCCTTGATCTTTCTGGAAACCCGATTGGAGATGATGGAGTTAAGACCCTGTGTGATTTGCTAGTGAATAATTCTAGCATACAGACGCTTCGGCTAAACAGTACTGACGTGGGAGACGAGGGTGCAAAAGCTGTTTCCGAGATGCTGAAGAAAAATTCAAGCTTGCGCATAATTGAGCTTAACAATAATATGATTGATTATTCTGGATTTACAAGTCTTGGCGGAGCACTTCTTGAAAACAACACCATACGGAACATACATCTTACTGGCAATTATGGTGGTGCCCTGGGAGCTAATGCTTTGGCTAAAGGACTTGAAGGGAACAAATCACTGAGGGAACTTCATCTGAATGGAAATTCGATTGGTGACGAGGGGGTGCGTGCCTTAATTTCAGGTTTATCTTCGCGTAAAGGAAAACTGGCACTTCTTGACATTGGTAACAACTCAATCACTGCCAAAGGGGCCTTTCATGTTGCCGAATTCATTAAGAGAACTAAGAGCTTGGTTTTATTGAATTTGTACATGAATGATATCGGCGATGAGGGTGCCGAAAAGATTGCTGATTCTCTAAAGCAAAATCGGACAATAAAAACTTTAGATCTGGTGAGGAGCGATGAATCTGTGTATTTTCTCTTCCCTGACTACAAATTTAAGATGATGACTCTTTTTTGGTGGGTTTATTTACAGGGAGGGAATAACATACATGGTGACGGTATTACCAAGCTTGCCCAAGCATTGAAGGATAACGATGCCATCACGACTTTGGAAATTTCTTATAATCCCATTGGACCAGAAGGAGCGGAGGCTTTATCTGAGGTGCTGAAGTTCCATGGAAATGTAAAAAATCTCAAGCTTGGTTGGTGTAAGATAGGACCAAAGGGTGCTGAATTTATTGCAGAAACTCTGAAATATAATACTACAATATCTGTCTTGGATTTACGGGGCAATGGTCTACGGGATGAGGGTGCAACTTGCCTTGCTCGCAGCTTGAAAGTGGTTAACGAAGCTTTAACTTCACTAGATTTAGGTTTCAATGAAATAAGGGATCCAGGTGCTTTCGCCATTGCTCAGGCACTCAAAGCGAACGAGGACATAGCAGTTACATCCTTGAATCTCGCCAATAACTTCCTGACCAAATTCGGGCAGAGTGCTTTAACAGATGCCAGAGATCATGTCCATGAGATGTGTGAAAAGGAAGTTAGTATTTCTTACTAA 1902 43.01 MASTSTSTISFCSHPKIFLRLHSLGSPRVGFGASGLNYHANGVLLPVTHRTRGFRLRNLVLKATLRSDSGSRRAASSRRVYRDSQTQSTSLVAPVKQLASTVLPAGVFVVVTFVLWKLVERLMVPKSDKSSSSVKNKWSFGAGINLFPDLAAKVDREAKLKLNDFAKELRTFRSVDMTARNFGDEGLFFLAESLGYNQTVEEVNFSANGITAEGIKAFDGVLQSNIILKTLDLSGNPIGDDGVKTLCDLLVNNSSIQTLRLNSTDVGDEGAKAVSEMLKKNSSLRIIELNNNMIDYSGFTSLGGALLENNTIRNIHLTGNYGGALGANALAKGLEGNKSLRELHLNGNSIGDEGVRALISGLSSRKGKLALLDIGNNSITAKGAFHVAEFIKRTKSLVLLNLYMNDIGDEGAEKIADSLKQNRTIKTLDLVRSDESVYFLFPDYKFKMMTLFWWVYLQGGNNIHGDGITKLAQALKDNDAITTLEISYNPIGPEGAEALSEVLKFHGNVKNLKLGWCKIGPKGAEFIAETLKYNTTISVLDLRGNGLRDEGATCLARSLKVVNEALTSLDLGFNEIRDPGAFAIAQALKANEDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCEKEVSISY 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15595602 15616515 - PI0024261.2 Cmetu09g1642 366515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu09g1642 633 Gene3D Ribonuclease Inhibitor 368 438 IPR032675 -
Cmetu09g1642 633 FunFam RNI-like superfamily protein 291 371 - -
Cmetu09g1642 633 Gene3D Ribonuclease Inhibitor 158 287 IPR032675 -
Cmetu09g1642 633 Pfam Leucine Rich repeat 196 218 IPR001611 GO:0005515
Cmetu09g1642 633 Pfam Leucine Rich repeat 509 528 IPR001611 GO:0005515
Cmetu09g1642 633 Pfam Leucine Rich repeat 566 585 IPR001611 GO:0005515
Cmetu09g1642 633 Pfam Leucine Rich repeat 481 500 IPR001611 GO:0005515
Cmetu09g1642 633 Pfam Leucine Rich repeat 252 274 IPR001611 GO:0005515
Cmetu09g1642 633 Pfam Leucine Rich repeat 227 247 IPR001611 GO:0005515
Cmetu09g1642 633 Pfam Leucine Rich repeat 337 358 IPR001611 GO:0005515
Cmetu09g1642 633 Pfam Leucine Rich repeat 533 556 IPR001611 GO:0005515
Cmetu09g1642 633 Pfam Leucine Rich repeat 397 416 IPR001611 GO:0005515
Cmetu09g1642 633 Gene3D Ribonuclease Inhibitor 288 367 IPR032675 -
Cmetu09g1642 633 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 166 294 - -
Cmetu09g1642 633 SMART LRR_RI_2 309 336 - -
Cmetu09g1642 633 SMART LRR_RI_2 534 561 - -
Cmetu09g1642 633 SMART LRR_RI_2 225 252 - -
Cmetu09g1642 633 SMART LRR_RI_2 253 280 - -
Cmetu09g1642 633 SMART LRR_RI_2 337 364 - -
Cmetu09g1642 633 SMART LRR_RI_2 506 533 - -
Cmetu09g1642 633 SMART LRR_RI_2 197 224 - -
Cmetu09g1642 633 SMART LRR_RI_2 366 393 - -
Cmetu09g1642 633 SMART LRR_RI_2 478 505 - -
Cmetu09g1642 633 SMART LRR_RI_2 563 590 - -
Cmetu09g1642 633 SMART LRR_RI_2 394 421 - -
Cmetu09g1642 633 SMART LRR_RI_2 281 308 - -
Cmetu09g1642 633 Gene3D Ribonuclease Inhibitor 456 630 IPR032675 -
Cmetu09g1642 633 SUPERFAMILY RNI-like 167 431 - -
Cmetu09g1642 633 SUPERFAMILY RNI-like 460 621 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu09g1642 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011878 1 3 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 28